View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1806_low_1 (Length: 565)
Name: NF1806_low_1
Description: NF1806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1806_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 36876598 - 36876721
Alignment:
| Q |
18 |
atatccagttgttggaggtaaggaaaagaatgagcaatgaaggatatgtcagtatggtatagagagacgatgttggaacatgtgagagaggtcaaggttg |
117 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
36876598 |
atatccagttgttggaggaaaggaaaagaatgagcaatgaaggatatgtcagtatggtatagagagccaatgttggaacatgtgagagaggtcaaggttg |
36876697 |
T |
|
| Q |
118 |
atgatatagtagtctttttgagaa |
141 |
Q |
| |
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| |||||||| || |||||||||| |
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| T |
36876698 |
acgatatagtggtgtttttgagaa |
36876721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 479
Target Start/End: Original strand, 33397512 - 33397970
Alignment:
| Q |
18 |
atatccagttgttggaggtaaggaaaagaatgagcaatgaaggatatgtcagtatggtatagagagacgatgttggaacatgtgagagaggtcaaggttg |
117 |
Q |
| |
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||||||| |||||||||| |||| || |||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
33397512 |
atatccaattgttggaggaaagggaaggaatcggcaatgaaggatatgtcagtatggtatagagagccgatgttggaacaagtgagagaggtcaaggttg |
33397611 |
T |
|
| Q |
118 |
atgatatagtagtctttttgagaagagttagtagccctaatgtagggaaggtggggtgattggagaggttgagagatgt---------gagggaaacaga |
208 |
Q |
| |
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|| |||| |||||||||| |||| | | ||||| || ||||| |||||||| || ||||||||||||||||| |||||||||||| |
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| T |
33397612 |
at------ttagtgtttttgagaatagtttgcaatcctaacgtggggaaagtggggtggtttgagaggttgagagatgtgagacgggagagggaaacaga |
33397705 |
T |
|
| Q |
209 |
aggaggaattcgagagagaagtgcgttaaggtcaccaaggaagcatgagagatcgagggaggtgagttttgagaacctttggaaggggcgagagagggga |
308 |
Q |
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| | || |||||||||||||| ||| |||||| ||||||| ||||| || || || || || |||| ||||||||||||| | ||||||| || |
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| T |
33397706 |
acgggggattcgagagagaagaatgtttgtgtcaccgcggaagcacgagaggtcaagtgaagtaagatttgggaacctttggaagagacgagagaaggat |
33397805 |
T |
|
| Q |
309 |
gatgtattatagaataatgccatggaatacagaaaacggtttgacaaggagaggaactgtttggatacaagggatagagtctctaagcaatgattacggt |
408 |
Q |
| |
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|||| ||| |||| ||||| | ||||| || | ||||||||| | | ||| | |||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
33397806 |
gatggattgtagattaatgtgacggaatgcacagaacggtttgttacgtcgagtagttgtttggacacaagggatagagtctctaagtaatgattacggt |
33397905 |
T |
|
| Q |
409 |
cctcgacactatcgttaccgttgttgaggagtttcgataacacatattcccaacaatcgtcaggtaaacct |
479 |
Q |
| |
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||| | |||| |||||| |||||||| ||||||||||||||||| ||||| || |||||||| |
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| T |
33397906 |
tctc------aacgttgaggttgttaaggagtttggataacacatattcccagcaatcatcctgtaaacct |
33397970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 93 - 395
Target Start/End: Complemental strand, 37579839 - 37579537
Alignment:
| Q |
93 |
gaacatgtgagagaggtcaaggttgatgatatagtagtctttttgagaagagttagtagccctaatgtagggaaggtggggtgattggagaggttgagag |
192 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| || |||||||||| ||| | | ||||||| |||||||||||||| |||||||||||||||| |
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| T |
37579839 |
gaacaagtcagagaggtcaaggttgatgatatagtggtgtttttgagaatagtctgcaaccctaatacggggaaggtggggtggttggagaggttgagag |
37579740 |
T |
|
| Q |
193 |
atgtgagggaaacagaaggaggaattcgagagagaagtgcgttaaggtcaccaaggaagcatgagagatcgagggaggtgagttttgagaacctttggaa |
292 |
Q |
| |
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| |||| |||| ||||||| | |||||||||||||| ||| |||||||| |||||| ||||| |||||||| |||| |||| |||||||||||| |
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| T |
37579739 |
aagtgatggaacaccaaggagggaatcgagagagaagtgtgtttaggtcaccgcggaagccagagaggtcgagggatttgaggtttgggaacctttggaa |
37579640 |
T |
|
| Q |
293 |
ggggcgagagaggggagatgtattatagaataatgccatggaatacagaaaacggtttgacaaggagaggaactgtttggatacaagggatagagtctct |
392 |
Q |
| |
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| ||| | |||| || ||| ||| ||| |||||| | |||||| | | ||||||||| | |||||||||||||||||| |||||||||||||| ||| |
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| T |
37579639 |
gaggcaatagagtggccatggattgcagattaatgctaaggaataaacagaacggtttgtgatggagaggaactgtttggaaacaagggatagagtatct |
37579540 |
T |
|
| Q |
393 |
aag |
395 |
Q |
| |
|
||| |
|
|
| T |
37579539 |
aag |
37579537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 18 - 480
Target Start/End: Complemental strand, 27004852 - 27004393
Alignment:
| Q |
18 |
atatccagttgttggaggtaaggaaaagaatgagcaatgaaggatatgtcagtatggtatagagagacgatgttggaacatgtgagagaggtcaaggttg |
117 |
Q |
| |
|
||||||| |||||||||| | || || |||| || || |||||||||| ||| ||| ||||||| | || |||||||||||||||||||||||||| | |
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|
| T |
27004852 |
atatccaattgttggaggaaggggaatgaatctgcgatcaaggatatgtgagtgtggcatagagaagccatattggaacatgtgagagaggtcaaggtgg |
27004753 |
T |
|
| Q |
118 |
atgatatagtagtctttttgagaagagttagtagccctaatgtagggaaggtggggtgattggagaggttgagagatgtgagggaaacagaaggaggaat |
217 |
Q |
| |
|
|| ||||||||||||||||||||||| | | |||||| |||||||||| ||| |||||||||||||| |||||||| | || ||||| || || |
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| T |
27004752 |
atttagtagtagtctttttgagaagagtttgcaaccctaagacggggaaggtggtgtggttggagaggttgagggatgtgagagtaatagaagcggggat |
27004653 |
T |
|
| Q |
218 |
tcgagagagaagtgcgttaaggtcaccaaggaagcatgagagatcgagggaggtgagttttgagaacctttggaaggggcgagagaggggagatgtatta |
317 |
Q |
| |
|
|||||||||||| ||||| |||||||| |||||| ||||| |||||||| ||||| ||| ||||||||| ||||| ||| ||| || | ||| |
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|
| T |
27004652 |
tcgagagagaagagcgtttaggtcaccgcggaagctggagaggtcgagggatgtgagattttggaacctttgaaagggtcgataga---gattttgattg |
27004556 |
T |
|
| Q |
318 |
tagaataatgccatggaatacagaaaacggtttgacaaggagaggaactgtttggatacaagggatagagtctctaagcaatgattacggtcctcgacac |
417 |
Q |
| |
|
|||| |||| | |||||||| || |||||||| | |||||||| ||||| |||||||| |||||||||||||| ||| ||||| || ||||| | |
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| T |
27004555 |
tagattaatttgaaggaatacaagaatcggtttgagactgagaggaattgttttgatacaagtgatagagtctctaaataattgttacgctcgtcgacgc |
27004456 |
T |
|
| Q |
418 |
tatcgttaccgttgttgaggagtttcgataacacatattcccaacaatcgtcaggtaaacctc |
480 |
Q |
| |
|
|| ||| | ||||| | || |||||||||||| |||||||| ||||| || |||||||||| |
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|
| T |
27004455 |
taaggttctctttgttcacgattttcgataacacgtattcccagcaatcatcgggtaaacctc |
27004393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 132 - 293
Target Start/End: Complemental strand, 33713822 - 33713661
Alignment:
| Q |
132 |
tttttgagaagagttagtagccctaatgtagggaaggtggggtgattggagaggttgagagatgtgagggaaacagaaggaggaattcgagagagaagtg |
231 |
Q |
| |
|
||||||||||||| | | | |||||| ||||||||||||||| |||||||||||||| || |||||||||||| || |||| |||||||||||||||| |
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|
| T |
33713822 |
tttttgagaagagctcgcaaccctaactcagggaaggtggggtggttggagaggttgagggaagtgagggaaacaaaatgagggattcgagagagaagtg |
33713723 |
T |
|
| Q |
232 |
cgttaaggtcaccaaggaagcatgagagatcgagggaggtgagttttgagaacctttggaag |
293 |
Q |
| |
|
||| |||||||| ||||||||| || |||||||||||||| |||| |||| |||||||| |
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|
| T |
33713722 |
tgtttaggtcaccgcagaagcatgaaaggtcgagggaggtgagatttgggaacatttggaag |
33713661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 162 - 258
Target Start/End: Complemental strand, 33707958 - 33707862
Alignment:
| Q |
162 |
gggaaggtggggtgattggagaggttgagagatgtgagggaaacagaaggaggaattcgagagagaagtgcgttaaggtcaccaaggaagcatgaga |
258 |
Q |
| |
|
|||||||||||||| |||||||||||||| || ||||||||||||||| |||| |||||||||||||||| ||| ||||||||| ||||||||||| |
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|
| T |
33707958 |
gggaaggtggggtggttggagaggttgagggaagtgagggaaacagaatgagggattcgagagagaagtgtgtttaggtcaccaccgaagcatgaga |
33707862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 276 - 398
Target Start/End: Complemental strand, 33707861 - 33707739
Alignment:
| Q |
276 |
tttgagaacctttggaaggggcgagagaggggagatgtattatagaataatgccatggaatacagaaaacggtttgacaaggagaggaactgtttggata |
375 |
Q |
| |
|
|||| ||||||||||||| |||||||||| || ||||||| || | |||| || |||||| | | ||| ||| | | |||||| || |||||||||| |
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|
| T |
33707861 |
tttgggaacctttggaagaggcgagagagtggtaatgtattgtatattaatctcaaggaatatatagaactgttggtgacggagagtaattgtttggata |
33707762 |
T |
|
| Q |
376 |
caagggatagagtctctaagcaa |
398 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
33707761 |
caagggatagagtctctaagcaa |
33707739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 165 - 373
Target Start/End: Complemental strand, 18669261 - 18669050
Alignment:
| Q |
165 |
aaggtggggtgattggagaggttgagagatgtgag---ggaaacagaaggaggaattcgagagagaagtgcgttaaggtcaccaaggaagcatgagagat |
261 |
Q |
| |
|
||||||||||| |||| ||||||||| |||||||| |||||||||||| |||| |||||||||||||| ||||||||||| ||||| ||||||| |
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|
| T |
18669261 |
aaggtggggtggttggtgaggttgagggatgtgagacgggaaacagaagggggaaaacgagagagaagtgcaataaggtcaccacagaagctagagagat |
18669162 |
T |
|
| Q |
262 |
cgagggaggtgagttttgagaacctttggaaggggcgagagaggggagatgtattatagaataatgccatggaatacagaaaacggtttgacaaggagag |
361 |
Q |
| |
|
||| ||||||||| ||||| || ||||||||| ||||| || || ||| ||| |||| ||||| | ||||| | ||||||||||| | |||||| |
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|
| T |
18669161 |
cgacggaggtgaggtttgataatctttggaagaggcgatggattggttatggattgtagattaatgtgacagaataaacaaaacggtttgtgatggagag |
18669062 |
T |
|
| Q |
362 |
gaactgtttgga |
373 |
Q |
| |
|
|||||||||||| |
|
|
| T |
18669061 |
gaactgtttgga |
18669050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 299
Target Start/End: Complemental strand, 18662802 - 18662702
Alignment:
| Q |
199 |
gggaaacagaaggaggaattcgagagagaagtgcgttaaggtcaccaaggaagcatgagagatcgagggaggtgagttttgagaacctttggaaggggcg |
298 |
Q |
| |
|
||||||||||||| |||| || ||||||| ||| |||||||||||| ||||| |||||||||| ||||||||| |||| || ||||||||| |||| |
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|
| T |
18662802 |
gggaaacagaagggggaaaacgggagagaattgcattaaggtcaccacagaagctagagagatcgacggaggtgaggtttgttaatctttggaagaggcg |
18662703 |
T |
|
| Q |
299 |
a |
299 |
Q |
| |
|
| |
|
|
| T |
18662702 |
a |
18662702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 1755546 - 1755578
Alignment:
| Q |
85 |
cgatgttggaacatgtgagagaggtcaaggttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
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|
| T |
1755546 |
cgatgttggaacatgtgagagaggtcaaagttg |
1755578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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