View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1806_low_13 (Length: 228)
Name: NF1806_low_13
Description: NF1806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1806_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 64 - 218
Target Start/End: Original strand, 42746598 - 42746753
Alignment:
| Q |
64 |
caaatagaaatggacagtggacacaaacttcaaggtactttaatcaaacaatgttgccgttaaagcaaacnnnnnnnnn-ttgtatcagtgtgacagaaa |
162 |
Q |
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| T |
42746598 |
caaatagaaatggacagtggacacaaacttcaaggtactttaatcaaacaatgttgccgttaaagcaaacaaaaaaaaaattgtatcagtgtgacagaaa |
42746697 |
T |
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| Q |
163 |
cattagaagaagaaaagaaagtgacattagaaacaacaacgttgaatgtgtgatga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42746698 |
cattagaagaagaaaagaaagtgacattagaaacaacaacgttgaatgtgtgatga |
42746753 |
T |
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