View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1806_low_2 (Length: 464)
Name: NF1806_low_2
Description: NF1806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1806_low_2 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 14735358 - 14734900
Alignment:
| Q |
1 |
tatggcaagaattaacaagttaataaagcaaaacatagagttgtggagataatcacgtctacacaaaacttagaaaaccacgttgtctcacaccgaactc |
100 |
Q |
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| T |
14735358 |
tatggcaagaattaacaagttaatcaagcaaaacatagagttgtggagataatcacatctacacaaaacttagaaaaccacgttg-ctcacaccgaactc |
14735260 |
T |
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| Q |
101 |
ttttctaaccggctgacattttttgtttatacttaaagtcagtgaactaagaaaatcaaagaccataccagtggtgattccaattttactcgagtcccat |
200 |
Q |
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| T |
14735259 |
ttttctaaccggctgacattttttgtttatacttaaagtcagtgaactaagaaaatcaaagaccataccagtggtgattccagttttactcgagtcccat |
14735160 |
T |
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| Q |
201 |
cattttgaacctggtgcttcaagaatttcttgctcatctctcaatacttctcactagaaatggctaagcgcttgactaaccgctacttatcctatctcat |
300 |
Q |
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| T |
14735159 |
cattttgaacctggtgcttcaagaatttcttactcatctctcaatacttctcactagaaatggctaaccgcttgactaacggctacttatcctatctc-- |
14735062 |
T |
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| Q |
301 |
atatgaaactcctattccaaggtccaagaatttgcgtattccttaaacttcttactaatcaatttccggtgcgccactttgattcatcatttatatatca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14735061 |
--atgaaactcctattccaaggtccaagaatttgcgtattccttaaacttcttactaatcaatttccactgcgccactttgattcatcatttatatatca |
14734964 |
T |
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| Q |
401 |
ttagccataatcaccaatctgtgagactcgtgggtattacactctcattaatacatggttattt |
464 |
Q |
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| T |
14734963 |
ttagccataatcaccaatccgtgagactcgtgggtattacactctcattaatacatggttattt |
14734900 |
T |
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