View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1806_low_3 (Length: 421)
Name: NF1806_low_3
Description: NF1806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1806_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 299 - 410
Target Start/End: Complemental strand, 10000401 - 10000291
Alignment:
| Q |
299 |
gttgaaccggattgaatcggggctgaaccatttcaaccagggttggttgaaccggtatatttgttgcatattttaaccaattaaaccatgactcagaagt |
398 |
Q |
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| T |
10000401 |
gttgaaccggattgaatcgggactgaaccatttcaacc-gagttggttgaaccggtgtattcgctgcatattttaaccaattaaatcatgactcagaagt |
10000303 |
T |
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| Q |
399 |
ttcacaggttct |
410 |
Q |
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| T |
10000302 |
ttcaccggttct |
10000291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 156 - 242
Target Start/End: Complemental strand, 10001145 - 10001059
Alignment:
| Q |
156 |
ctaatactttattataaaatgacagctagagataattcagaaactactaaaggcatgcaataatatggagaagtataagaaggaggt |
242 |
Q |
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| T |
10001145 |
ctaaaactttattataaaatgacagctagagataattcagaaactactgaaggcatgcaacaatatggagaagtataagaaggaggt |
10001059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 10001746 - 10001613
Alignment:
| Q |
18 |
cctgaaactaaggttagtgattttactgctctacattacccctccttactatgagcatt-gagattcgtatcgtgaatcaaaagaactattttctgaatc |
116 |
Q |
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| T |
10001746 |
cctgaaactaaggttagtgattttactgctctacattacccctccttaatatgagcattagagattcgtatcatgaatcgaaataactatt--------- |
10001656 |
T |
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| Q |
117 |
gcggtatttgaatcttattatgaatcgtaagatacattactaata |
161 |
Q |
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| T |
10001655 |
--ggtaatcgaatcttattatgaatcgtaagatgcattactaata |
10001613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 38909276 - 38909308
Alignment:
| Q |
122 |
atttgaatcttattatgaatcgtaagatacatt |
154 |
Q |
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| T |
38909276 |
atttgaatcttattatgaatcgtaagatacatt |
38909308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 161
Target Start/End: Complemental strand, 7295740 - 7295705
Alignment:
| Q |
126 |
gaatcttattatgaatcgtaagatacattactaata |
161 |
Q |
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| T |
7295740 |
gaatcttattatgaattgtaagatacattactaata |
7295705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 161
Target Start/End: Complemental strand, 2402743 - 2402709
Alignment:
| Q |
127 |
aatcttattatgaatcgtaagatacattactaata |
161 |
Q |
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| T |
2402743 |
aatcttactatgaatcgtaagatacattactaata |
2402709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 27935449 - 27935506
Alignment:
| Q |
98 |
aagaactattttctgaatcgcggtatttgaatcttattatgaatcgtaagatacattact |
157 |
Q |
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| T |
27935449 |
aagaactattttctgaaacgtg--aattgaatcttattatgaatcatatgatacattact |
27935506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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