View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1807-Insertion-10 (Length: 628)

Name: NF1807-Insertion-10
Description: NF1807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1807-Insertion-10
NF1807-Insertion-10
[»] chr7 (4 HSPs)
chr7 (202-590)||(3929628-3930015)
chr7 (8-164)||(3929364-3929520)
chr7 (505-590)||(21317648-21317733)
chr7 (500-590)||(3928573-3928663)
[»] chr2 (3 HSPs)
chr2 (506-590)||(13576422-13576506)
chr2 (535-587)||(34562651-34562703)
chr2 (535-587)||(34571445-34571497)
[»] scaffold0197 (1 HSPs)
scaffold0197 (505-590)||(31085-31170)
[»] chr8 (8 HSPs)
chr8 (507-590)||(43479645-43479728)
chr8 (507-581)||(38807079-38807153)
chr8 (507-590)||(38799569-38799652)
chr8 (507-590)||(38821865-38821948)
chr8 (535-587)||(41944021-41944073)
chr8 (541-587)||(44344032-44344078)
chr8 (535-584)||(26592248-26592297)
chr8 (535-587)||(25865777-25865829)
[»] chr4 (1 HSPs)
chr4 (508-590)||(24860620-24860702)
[»] chr5 (7 HSPs)
chr5 (506-587)||(12531569-12531650)
chr5 (506-590)||(9866627-9866711)
chr5 (506-589)||(9894718-9894800)
chr5 (506-587)||(12546969-12547050)
chr5 (543-590)||(9870055-9870102)
chr5 (506-585)||(9903568-9903647)
chr5 (538-587)||(12538675-12538724)
[»] chr1 (1 HSPs)
chr1 (535-587)||(7594130-7594182)


Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 202 - 590
Target Start/End: Original strand, 3929628 - 3930015
Alignment:
Q  202 atatccatagacaacttcgatattaaaattgaagcaaaatttcccaacttcaaagctaaaaagcaacaaattagttactatgatcaaattttcatcaaat 301  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3929628 atatccatagacaacttcaatattaaaattgaagcaaaatttcccaacgtcaaagctaaaaagcaacaaattagttactatgatcgaattttcatcaaat 3929727  T
Q  302 cgagttaaacaaaattgaaaattagtttgaacaattaaatgcaatcaatttgattaagtatcatagattcaacagatcaattcaaaattcaagattcact 401  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3929728 caagttaaacaaaattgaaaattagtttgaacaattaaatgcaatcaatttgattaagtatcatagattcaacagatcaattcaaaattcaagattcact 3929827  T
Q  402 ttttccaagagaaattagattcaaatcctaacnnnnnnnntaaaactctatcatctaaacatctaaagaaaataactgtgaatccatgcaatgtaatcaa 501  Q
    ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3929828 ttttccaagagaaattagattcaaatcctaac-aacaaaataaaactctatcatctaaacatctaaagaaaataactgtgaatccatgcaatgtaatcaa 3929926  T
Q  502 atcttctaagccctttcgcctctgattcttctcgcaagttgaatatccttcggcataatagtaactctcttagcatgaatagcacaaag 590  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3929927 atcttctaagccctttcgcctctgattcttcttgcaagttgaatatccttcggcataatagtaactctcttagcatgaatggcacaaag 3930015  T

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Target: chr7; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 3929364 - 3929520
Alignment:
Q  8 atcagtacatttgatagccttgggagaggcttatcacaccattgccaaagctcaattactgtatatttcagtgttgcctattaattaatcattgcatacc 107  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||    
T  3929364 atcagtacatttgatagccttgggagaggcttatcacaacattgccaaagctcaattagtgtatatttcagtgttgcctattaactaatcaatgcatacc 3929463  T
Q  108 aggtttttattgctaaattgatttagtgtagtaaatttgactacctgataaatgatt 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3929464 aggtttttattgctaaattgatttagtgtagtaaatttgactacctgataaatgatt 3929520  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 505 - 590
Target Start/End: Complemental strand, 21317733 - 21317648
Alignment:
Q  505 ttctaagccctttcgcctctgattcttctcgcaagttgaatatccttcggcataatagtaactctcttagcatgaatagcacaaag 590  Q
    |||||||||||||| || |  |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  21317733 ttctaagccctttcaccacgaattcttcttgcaagttgaatatccttaggcataatagtaactctcttagcatgaatagcgcaaag 21317648  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 500 - 590
Target Start/End: Original strand, 3928573 - 3928663
Alignment:
Q  500 aaatcttctaagccctttcgcctctgattcttctcgcaagttgaatatccttcggcataatagtaactctcttagcatgaatagcacaaag 590  Q
    ||||||||||||| || ||||  |||||||| |  ||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||    
T  3928573 aaatcttctaagctctctcgcacctgattctgcatgcaagtttaatatccttaggcacaatagtaactctcttagcatgaatagcacaaag 3928663  T

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Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 506 - 590
Target Start/End: Complemental strand, 13576506 - 13576422
Alignment:
Q  506 tctaagccctttcgcctctgattcttctcgcaagttgaatatccttcggcataatagtaactctcttagcatgaatagcacaaag 590  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  13576506 tctaagccctttcgcctctgattcttctcgcaagttgaatatccttaggcataatagtaaccctcttagcatgaatagcacaaag 13576422  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 535 - 587
Target Start/End: Original strand, 34562651 - 34562703
Alignment:
Q  535 gcaagttgaatatccttcggcataatagtaactctcttagcatgaatagcaca 587  Q
    ||||||||||||||||| |||||||| ||||| |||||||||||||| |||||    
T  34562651 gcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcaca 34562703  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 535 - 587
Target Start/End: Original strand, 34571445 - 34571497
Alignment:
Q  535 gcaagttgaatatccttcggcataatagtaactctcttagcatgaatagcaca 587  Q
    ||||||||||||||||| |||||||| ||||| |||||||||||||| |||||    
T  34571445 gcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcaca 34571497  T

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Target: scaffold0197 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 505 - 590
Target Start/End: Complemental strand, 31170 - 31085
Alignment:
Q  505 ttctaagccctttcgcctctgattcttctcgcaagttgaatatccttcggcataatagtaactctcttagcatgaatagcacaaag 590  Q
    |||||||||||||| || |  |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  31170 ttctaagccctttcaccacgaattcttcttgcaagttgaatatccttaggcataatagtaactctcttagcatgaatagcgcaaag 31085  T

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Target: chr8 (Bit Score: 56; Significance: 7e-23; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 507 - 590
Target Start/End: Original strand, 43479645 - 43479728
Alignment:
Q  507 ctaagccctttcgcctctgattcttctcgcaagttgaatatccttcggcataatagtaactctcttagcatgaatagcacaaag 590  Q
    ||||||||| |||||||| |||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||    
T  43479645 ctaagccctctcgcctctaattcttcttgcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcgcaaag 43479728  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 507 - 581
Target Start/End: Complemental strand, 38807153 - 38807079
Alignment:
Q  507 ctaagccctttcgcctctgattcttctcgcaagttgaatatccttcggcataatagtaactctcttagcatgaat 581  Q
    ||||||||| ||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  38807153 ctaagccctctcgcctctgattcttcttgcaagttgaatgtccttaggcatgatagtaactctcttagcatgaat 38807079  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 507 - 590
Target Start/End: Complemental strand, 38799652 - 38799569
Alignment:
Q  507 ctaagccctttcgcctctgattcttctcgcaagttgaatatccttcggcataatagtaactctcttagcatgaatagcacaaag 590  Q
    ||||||||| || |||||||||||||| ||||| ||||| ||||| ||||| || |||||||||||||||||||| ||||||||    
T  38799652 ctaagccctctctcctctgattcttcttgcaagctgaatgtccttaggcatgattgtaactctcttagcatgaattgcacaaag 38799569  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 507 - 590
Target Start/End: Original strand, 38821865 - 38821948
Alignment:
Q  507 ctaagccctttcgcctctgattcttctcgcaagttgaatatccttcggcataatagtaactctcttagcatgaatagcacaaag 590  Q
    ||||||||| || |||||||||||||| ||||| ||||| ||||| ||||| || |||||||||||||||||||| ||||||||    
T  38821865 ctaagccctctctcctctgattcttcttgcaagctgaatgtccttaggcatgattgtaactctcttagcatgaattgcacaaag 38821948  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 535 - 587
Target Start/End: Complemental strand, 41944073 - 41944021
Alignment:
Q  535 gcaagttgaatatccttcggcataatagtaactctcttagcatgaatagcaca 587  Q
    ||||||||||| ||||| |||||||| ||||| |||||||||||||| |||||    
T  41944073 gcaagttgaatgtcctttggcataattgtaaccctcttagcatgaattgcaca 41944021  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 541 - 587
Target Start/End: Complemental strand, 44344078 - 44344032
Alignment:
Q  541 tgaatatccttcggcataatagtaactctcttagcatgaatagcaca 587  Q
    ||||||||||| |||||||| || || ||||||||||||||||||||    
T  44344078 tgaatatccttgggcataatcgtcaccctcttagcatgaatagcaca 44344032  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 584
Target Start/End: Complemental strand, 26592297 - 26592248
Alignment:
Q  535 gcaagttgaatatccttcggcataatagtaactctcttagcatgaatagc 584  Q
    ||||| ||||||||||| ||||| |||||||| | |||||||||||||||    
T  26592297 gcaagctgaatatccttaggcatgatagtaacacgcttagcatgaatagc 26592248  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 535 - 587
Target Start/End: Complemental strand, 25865829 - 25865777
Alignment:
Q  535 gcaagttgaatatccttcggcataatagtaactctcttagcatgaatagcaca 587  Q
    ||||| ||||||||||| |||||||| || || |||||||||||||| |||||    
T  25865829 gcaagctgaatatcctttggcataatcgttaccctcttagcatgaattgcaca 25865777  T

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Target: chr4 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 508 - 590
Target Start/End: Complemental strand, 24860702 - 24860620
Alignment:
Q  508 taagccctttcgcctctgattcttctcgcaagttgaatatccttcggcataatagtaactctcttagcatgaatagcacaaag 590  Q
    |||||||| |||||||||||||| |  || |||||||||||||| |||||||| ||||||||||||||||||||||| |||||    
T  24860702 taagccctctcgcctctgattctgcgagcgagttgaatatccttgggcataatggtaactctcttagcatgaatagcgcaaag 24860620  T

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Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 506 - 587
Target Start/End: Complemental strand, 12531650 - 12531569
Alignment:
Q  506 tctaagccctttcgcctctgattcttctcgcaagttgaatatccttcggcataatagtaactctcttagcatgaatagcaca 587  Q
    |||||||||| |||||||||||||| |  || |||||||||||||| ||||| |||||||| |||||||||||||| |||||    
T  12531650 tctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcaca 12531569  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 506 - 590
Target Start/End: Original strand, 9866627 - 9866711
Alignment:
Q  506 tctaagccctttcgcctctgattcttctcgcaagttgaatatccttcggcataatagtaactctcttagcatgaatagcacaaag 590  Q
    |||||||||| | |||||||||||||   || ||||| || ||||  ||||||||||||||||||||||||||||||||||||||    
T  9866627 tctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaag 9866711  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 506 - 589
Target Start/End: Complemental strand, 9894800 - 9894718
Alignment:
Q  506 tctaagccctttcgcctctgattcttctcgcaagttgaatatccttcggcataatagtaactctcttagcatgaatagcacaaa 589  Q
    |||||||||| |||||||||||||| |  ||||||| ||||||||| | |||||||||||||| ||||||||||||||| ||||    
T  9894800 tctaagccctctcgcctctgattctgcgagcaagttcaatatcctt-gccataatagtaactcacttagcatgaatagcgcaaa 9894718  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 506 - 587
Target Start/End: Original strand, 12546969 - 12547050
Alignment:
Q  506 tctaagccctttcgcctctgattcttctcgcaagttgaatatccttcggcataatagtaactctcttagcatgaatagcaca 587  Q
    ||||||| || |||||||| ||||| |  ||||||||||||||||| ||||| |||||||| |||||||||||||| |||||    
T  12546969 tctaagctctctcgcctctaattctgcgagcaagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcaca 12547050  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 543 - 590
Target Start/End: Complemental strand, 9870102 - 9870055
Alignment:
Q  543 aatatccttcggcataatagtaactctcttagcatgaatagcacaaag 590  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  9870102 aatatccttaggcataatagtaactctcttagcatgaatagcgcaaag 9870055  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 506 - 585
Target Start/End: Complemental strand, 9903647 - 9903568
Alignment:
Q  506 tctaagccctttcgcctctgattcttctcgcaagttgaatatccttcggcataatagtaactctcttagcatgaatagca 585  Q
    ||||| |||| ||||||  ||||||| | ||||||||||||||||| || ||||||||||| || ||||||| |||||||    
T  9903647 tctaaaccctctcgcctgcgattcttttggcaagttgaatatccttaggtataatagtaacgcttttagcataaatagca 9903568  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 587
Target Start/End: Complemental strand, 12538724 - 12538675
Alignment:
Q  538 agttgaatatccttcggcataatagtaactctcttagcatgaatagcaca 587  Q
    ||||||||| | || ||||| |||||||||||||||||||||||||||||    
T  12538724 agttgaatacctttaggcatgatagtaactctcttagcatgaatagcaca 12538675  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 535 - 587
Target Start/End: Original strand, 7594130 - 7594182
Alignment:
Q  535 gcaagttgaatatccttcggcataatagtaactctcttagcatgaatagcaca 587  Q
    ||||| ||||||||||| |||||||| || || |||||||||||||| |||||    
T  7594130 gcaagctgaatatcctttggcataattgtcaccctcttagcatgaattgcaca 7594182  T

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