View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1807-Insertion-14 (Length: 351)
Name: NF1807-Insertion-14
Description: NF1807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1807-Insertion-14 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 187 - 351
Target Start/End: Complemental strand, 13102870 - 13102706
Alignment:
| Q |
187 |
gttcaggatatatgtaattattattagtgttctatagtatttattcaactaaccacttatcttcactactgttccatattctctaattttcaaaccataa |
286 |
Q |
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| T |
13102870 |
gttcaggatatatgtaattattattagtgttctatagtatttattcaactaaccacttatcttcactactgttccatattctctaattttcaaaccataa |
13102771 |
T |
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| Q |
287 |
aattccgagtcattaacaggaggcatggcacattttatcttcacaactgttcaatggtctctaat |
351 |
Q |
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| T |
13102770 |
aattccgagtcattaacaggaggcatggcacatattattttcacaactgttcaatggtctctaat |
13102706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 27 - 155
Target Start/End: Complemental strand, 13103033 - 13102900
Alignment:
| Q |
27 |
gaaattaagttacaacctttttgatggttaaaaacgaaatatactacctttgcttatgactatcgtttttgttggtttgatcctccaatgtgcttggct- |
125 |
Q |
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| T |
13103033 |
gaaattaagttacaatctttttgatggttaaaaacgaaatatactacctttacttttgactatcgtttttggtggtttgacccaccaatgtgcttggctt |
13102934 |
T |
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| Q |
126 |
----tttgtttagtgcccagcttgtaatttcatg |
155 |
Q |
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| T |
13102933 |
ttaatttgtttagtgcccagcttgtaatttcatg |
13102900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 28 - 155
Target Start/End: Complemental strand, 13216679 - 13216548
Alignment:
| Q |
28 |
aaattaagttacaacctttttgatggttaaaaacgaaatata----ctacctttgcttatgactatcgtttttgttggtttgatcctccaatgtgcttgg |
123 |
Q |
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| T |
13216679 |
aaattaagttacaacctttttgatggttaaaagtgaaatatgttagctacctttgcttttgaccatcatttctggtggcttgatcctctaatgtgtttgg |
13216580 |
T |
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| Q |
124 |
cttttgtttagtgcccagcttgtaatttcatg |
155 |
Q |
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| T |
13216579 |
cttttgtttagtggccatgttgtaatttcatg |
13216548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 228 - 329
Target Start/End: Complemental strand, 13215801 - 13215700
Alignment:
| Q |
228 |
tattcaactaaccacttatcttcactactgttccatattctctaattttcaaaccataaaattccgagtcattaacaggaggcatggcacattttatctt |
327 |
Q |
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| T |
13215801 |
tattcaaccaaccaattatcttcactacggttcaatagtctctgattttcaatccagaaaattcagagccatttacaggaggcatggcacattttatctt |
13215702 |
T |
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| Q |
328 |
ca |
329 |
Q |
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|| |
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| T |
13215701 |
ca |
13215700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 351
Target Start/End: Complemental strand, 13206074 - 13206009
Alignment:
| Q |
285 |
aaaattccgagtcattaacaggaggcatggcacattttatcttcacaactgttcaatggtctctaat |
351 |
Q |
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| T |
13206074 |
aaaatttcgagccattaacaggaggcatggcacatcttatcttcacaa-tgttcaatagtctctaat |
13206009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 39552139 - 39552244
Alignment:
| Q |
31 |
ttaagttacaacctttttgatggttaaaaacgaaatatactacctttgcttatgactatcgtttttgttggtttgatcctccaatgtgcttggcttttgt |
130 |
Q |
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| T |
39552139 |
ttaagttacgatcttttttatggttaaaaacgaattatgctacacttgcttttgactatcattttaggtggcttgatcatctaatgtgtttcacttctgt |
39552238 |
T |
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| Q |
131 |
ttagtg |
136 |
Q |
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| T |
39552239 |
ttagtg |
39552244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 35807850 - 35807967
Alignment:
| Q |
28 |
aaattaagttacaacctttttgatggttaaaaacgaaatatactacctttgcttatgactatcgtttttgttggtttgatcctccaatgtgcttggcttt |
127 |
Q |
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| T |
35807850 |
aaattaatttacaatctttt-gatggttgaaagcgaaatatattgccttcgcttttgactaacacttttgatggcttaatcccctaatatgcttagcttt |
35807948 |
T |
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| Q |
128 |
tgtttagtgcccagcttgt |
146 |
Q |
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| T |
35807949 |
tgtttagtgaccaacttgt |
35807967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 1934402 - 1934354
Alignment:
| Q |
61 |
cgaaatatactacctttgcttatgactatcgtttttgttggtttgatcc |
109 |
Q |
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| T |
1934402 |
cgaaatatactaccttcgcttttgactatcacttttgttggtttaatcc |
1934354 |
T |
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