View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1807-Insertion-15 (Length: 357)

Name: NF1807-Insertion-15
Description: NF1807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1807-Insertion-15
NF1807-Insertion-15
[»] chr2 (12 HSPs)
chr2 (8-357)||(32799709-32800058)
chr2 (8-357)||(32309008-32309357)
chr2 (12-357)||(32565478-32565831)
chr2 (12-357)||(32815100-32815453)
chr2 (21-357)||(32806663-32807007)
chr2 (70-167)||(28215852-28215949)
chr2 (226-354)||(28215713-28215838)
chr2 (291-354)||(28220448-28220511)
chr2 (12-70)||(32305293-32305351)
chr2 (226-311)||(28220274-28220356)
chr2 (83-115)||(28216008-28216040)
chr2 (77-110)||(28220194-28220227)
[»] chr6 (1 HSPs)
chr6 (12-357)||(301166-301503)


Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 8 - 357
Target Start/End: Complemental strand, 32800058 - 32799709
Alignment:
Q  8 tcatattcagttacaattccaaccaactcaataacttcctaaacaagtcttctctttctcttcatcttcatcatcaagaaaatgaggagattcttcatct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32800058 tcatattcagttacaattccaaccaactcaataacttcctaaacaagtcttctctttctcttcatcttcatcatcaagaaaatgaggagattcttcatct 32799959  T
Q  108 tcaacccatggttcatagttgcattcattgtattccttcctgttcttctctctctcagaaacccaagaggagaacctgaaccagaaaacaccataacaca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32799958 tcaacccatggttcatagttgcattcattgtattccttcctgttcttctctctctcagaaacccaagaggagaacctgaaccagaaaacaccataacaca 32799859  T
Q  208 aacaacttcatcttcttctttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32799858 aacaacttcatcttcttctttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggt 32799759  T
Q  308 tccaatcttcaatataatttctatagggattcttgccctcaagctgaaga 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32799758 tccaatcttcaatataatttctatagggattcttgccctcaagctgaaga 32799709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 8 - 357
Target Start/End: Original strand, 32309008 - 32309357
Alignment:
Q  8 tcatattcagttacaattccaaccaactcaataacttcctaaacaagtcttctctttctcttcatcttcatcatcaagaaaatgaggagattcttcatct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32309008 tcatattcagttacaattccaaccaactcaataacttcctaaacaagtcttctctttctcttcatcttcatcatcaagaaaatgaggagattcttcatct 32309107  T
Q  108 tcaacccatggttcatagttgcattcattgtattccttcctgttcttctctctctcagaaacccaagaggagaacctgaaccagaaaacaccataacaca 207  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32309108 tcaacccatggatcatagttgcattcattgtattccttcctgttcttgtctctctcagaaacccaagaggagaacctgaaccagaaaacaccataacaca 32309207  T
Q  208 aacaacttcatcttcttctttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32309208 aacaacttcatcttcttctttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggt 32309307  T
Q  308 tccaatcttcaatataatttctatagggattcttgccctcaagctgaaga 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32309308 tccaatcttcaatataatttctatagggattcttgccctcaagctgaaga 32309357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 12 - 357
Target Start/End: Complemental strand, 32565831 - 32565478
Alignment:
Q  12 attcagttacaattccaaccaactcaataacttcctaaacaagtcttctctttctcttca--------tcttcatcatcaagaaaatgaggagattcttc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||         ||||||||||||||||||||||||||||||||    
T  32565831 attcagttacaattccaaccaactcaataacttcctaaacaagtcttctctttttcttctcttgttcttcttcatcatcaagaaaatgaggagattcttc 32565732  T
Q  104 atcttcaacccatggttcatagttgcattcattgtattccttcctgttcttctctctctcagaaacccaagaggagaacctgaaccagaaaacaccataa 203  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32565731 atcttcaacccatggatcatagttgcattcattgtattccttcctgttcttgtctctctcagaaacccaagaggagaacctgaaccagaaaacaccataa 32565632  T
Q  204 cacaaacaacttcatcttcttctttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagaga 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32565631 cacaaacaacttcatcttcttctttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagaga 32565532  T
Q  304 tggttccaatcttcaatataatttctatagggattcttgccctcaagctgaaga 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32565531 tggttccaatcttcaatataatttctatagggattcttgccctcaagctgaaga 32565478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 12 - 357
Target Start/End: Complemental strand, 32815453 - 32815100
Alignment:
Q  12 attcagttacaattccaaccaactcaataacttcctaaacaagtcttctctttctcttca--------tcttcatcatcaagaaaatgaggagattcttc 103  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||         ||||||||||||||||||||||||||||||||    
T  32815453 attcagttacaattccaaccaacccaataacttcctaaacaagtcttctctttttcttctcttgttcttcttcatcatcaagaaaatgaggagattcttc 32815354  T
Q  104 atcttcaacccatggttcatagttgcattcattgtattccttcctgttcttctctctctcagaaacccaagaggagaacctgaaccagaaaacaccataa 203  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32815353 atcttcaacccatggatcatagttgcattcattgtattccttcctgttcttgtctctctcagaaacccaagaggagaacctgaaccagaaaacaccataa 32815254  T
Q  204 cacaaacaacttcatcttcttctttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagaga 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32815253 cacaaacaacttcatcttcttctttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagaga 32815154  T
Q  304 tggttccaatcttcaatataatttctatagggattcttgccctcaagctgaaga 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32815153 tggttccaatcttcaatataatttctatagggattcttgccctcaagctgaaga 32815100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 21 - 357
Target Start/End: Complemental strand, 32807007 - 32806663
Alignment:
Q  21 caattccaaccaactcaataacttcctaaacaagtcttctctttctcttca--------tcttcatcatcaagaaaatgaggagattcttcatcttcaac 112  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||         |||||||||||||||||||||||||||||||||||||||||    
T  32807007 caattccaaccaactcaataacttcctaaacaagtcttctctttttcttctcttgttcttcttcatcatcaagaaaatgaggagattcttcatcttcaac 32806908  T
Q  113 ccatggttcatagttgcattcattgtattccttcctgttcttctctctctcagaaacccaagaggagaacctgaaccagaaaacaccataacacaaacaa 212  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32806907 ccatggatcatagttgcattcattgtattccttcctgttcttccctctctcagaaacccaagaggagaatctgaaccagaaaacaccataacacaaacaa 32806808  T
Q  213 cttcatcttcttctttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaa 312  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32806807 tttcatcttcttctttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaa 32806708  T
Q  313 tcttcaatataatttctatagggattcttgccctcaagctgaaga 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  32806707 tcttcaatataatttctatagggattcttgccctcaagctgaaga 32806663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 70 - 167
Target Start/End: Complemental strand, 28215949 - 28215852
Alignment:
Q  70 catcttcatcatcaagaaaatgaggagattcttcatcttcaacccatggttcatagttgcattcattgtattccttcctgttcttctctctctcagaa 167  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| | |||||||||||||||||||||||||||    
T  28215949 catcatcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 28215852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 226 - 354
Target Start/End: Complemental strand, 28215838 - 28215713
Alignment:
Q  226 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataat 325  Q
    ||||| ||||||||||||||||||||| |  ||||| |    || |||||| |||||||||| | |||| |||||||||||||||||||||| |||||||    
T  28215838 tttctatcatacttcttttcgttcagtgaagttagctgg---tatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataat 28215742  T
Q  326 ttctatagggattcttgccctcaagctga 354  Q
    ||||||| ||||||||||||| |||||||    
T  28215741 ttctataaggattcttgccctgaagctga 28215713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 291 - 354
Target Start/End: Original strand, 28220448 - 28220511
Alignment:
Q  291 aaagaatcagagatggttccaatcttcaatataatttctatagggattcttgccctcaagctga 354  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  28220448 aaagaatcagagatggttccaatcttcaatataatttctataaggtttcttgccctcaagctga 28220511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 32305293 - 32305351
Alignment:
Q  12 attcagttacaattccaaccaactcaataacttcctaaacaagtcttctctttctcttc 70  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  32305293 attcagttacaattccaacaaacccaataacttcctaaacaagtcttctctttctcttc 32305351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 311
Target Start/End: Original strand, 28220274 - 28220356
Alignment:
Q  226 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttcca 311  Q
    ||||| ||||||||||||||||||||| |  ||||| |    || |||||| ||||||||||||||||||||||||||||||||||    
T  28220274 tttctatcatacttcttttcgttcagtgaagttagctgg---tatttttccgtttgatttcaatcaaagaatcagagatggttcca 28220356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 28216040 - 28216008
Alignment:
Q  83 aagaaaatgaggagattcttcatcttcaaccca 115  Q
    |||||||||||||||||||||||||||||||||    
T  28216040 aagaaaatgaggagattcttcatcttcaaccca 28216008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 28220194 - 28220227
Alignment:
Q  77 atcatcaagaaaatgaggagattcttcatcttca 110  Q
    ||||||||||||||||||||| ||||||||||||    
T  28220194 atcatcaagaaaatgaggagaatcttcatcttca 28220227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 12 - 357
Target Start/End: Original strand, 301166 - 301503
Alignment:
Q  12 attcagttacaattccaaccaactcaataacttcctaaacaagtcttctctttctcttcatcttcatcatcaagaaaatgaggagattcttcatcttcaa 111  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  301166 attcagttacaattccaacaaacccaataacttcctaaacaagtcttctctttctcttcttcttcatcatcaagaaaatgagaagattcttcatcttcaa 301265  T
Q  112 cccatggttcatagttgcattcattgtattccttcctgttcttctctctctcagaaacccaagaggagaacctgaaccagaaaacaccataacacaaaca 211  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| |||||||| | ||||| |||||||||||||||||||||    
T  301266 cccatggttcatagttgcattcattgtagtccttcccgttcttctctctttcagaaacccacgaggagaatcagaacccgaaaacaccataacacaaaca 301365  T
Q  212 acttcatcttcttctttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttcca 311  Q
    ||||||   |||||||||||||||||  ||||| |||||||||  ||   ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  301366 acttca---tcttctttctctcatac--cttttggttcagtcacgtt---agccaatacttttccatttgatttcaatcaaagaatcagagatggttcca 301457  T
Q  312 atcttcaatataatttctatagggattcttgccctcaagctgaaga 357  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  301458 atcttcaatataatttctatagggattctagccctcaagctgaaga 301503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University