View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1807-Insertion-17 (Length: 293)
Name: NF1807-Insertion-17
Description: NF1807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1807-Insertion-17 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 293
Target Start/End: Original strand, 3753161 - 3753446
Alignment:
| Q |
8 |
agaggaagcccttttgtaactgcttcagttacaaaaccaacctcactttcaatcacaacacttcataacatagtttctttgtcttctttcgacgacaaaa |
107 |
Q |
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| T |
3753161 |
agaggaagcccttttataactgcttcagttacaaaaccaacctcactttcaatcacaacacttcataacatagtttctttgtcttctttcgacgacaaaa |
3753260 |
T |
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| Q |
108 |
acaccaaacatacccttcaacttaataacactcagaaatggatcatatacacttcttcaccaataaaattcaaccatgatggttctgagattgtatccaa |
207 |
Q |
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| T |
3753261 |
acaccaaacatacccttcaacttaataacactcagaaatggatcatatacacttcttcaccaataaaattcaaccatgatggttctgagattgtatccaa |
3753360 |
T |
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| Q |
208 |
tccatttaccggtataatccgtatcatagtcattcctaataccaaatttgagaaaattcttgataaattcagctcttgttaccctg |
293 |
Q |
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| T |
3753361 |
tccattttccggtataatccgtatcatagtcattcctaataccaaatttgagaaaattcttgataaattcagctcttgttaccctg |
3753446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 8 - 292
Target Start/End: Complemental strand, 4047077 - 4046793
Alignment:
| Q |
8 |
agaggaagcccttttgtaactgcttcagttacaaaaccaacctcactttcaatcacaacacttcataacatagtttctttgtcttctttcgacgacaaaa |
107 |
Q |
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||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||| |||||| ||| ||||||||||| | || || | |||| |
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| T |
4047077 |
agaggaagcccttttttaactgcttcagttacaaaaccaatacctctttcaatcacaacaattcatagtataatttctttgtctccatttgataagaaaa |
4046978 |
T |
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| Q |
108 |
acaccaaacatacccttcaacttaataacactcagaaatggatcatatacacttcttcaccaataaaattcaaccatgatggttctgagattgtatccaa |
207 |
Q |
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| T |
4046977 |
aaaccaaatatacccttcaactcaataacaatcagacatggatcatatacacttcttcaccaatcaacttcaaccatgatggttccgaggttaaatccgg |
4046878 |
T |
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| Q |
208 |
tccatttaccggtataatccgtatcatagtcattcctaataccaaatttgagaaaattcttgataaattcagctcttgttaccct |
292 |
Q |
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||||||| ||||||| || |||||| || ||||| || |||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
4046877 |
tccattttccggtattattcgtatcgcggttgttcctgattccaatggtgagaaaattcttgataaatttagctcttgttaccct |
4046793 |
T |
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