View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1807-Insertion-2 (Length: 929)

Name: NF1807-Insertion-2
Description: NF1807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1807-Insertion-2
NF1807-Insertion-2
[»] chr6 (7 HSPs)
chr6 (240-929)||(25206692-25207381)
chr6 (8-209)||(25207412-25207613)
chr6 (153-200)||(2457309-2457356)
chr6 (150-186)||(24780481-24780517)
chr6 (149-200)||(31696623-31696674)
chr6 (146-195)||(19041621-19041670)
chr6 (158-203)||(21923286-21923331)
[»] chr8 (5 HSPs)
chr8 (151-198)||(42822676-42822723)
chr8 (156-200)||(5744516-5744560)
chr8 (146-182)||(11501486-11501522)
chr8 (156-200)||(14730406-14730450)
chr8 (151-203)||(26480712-26480764)
[»] chr2 (4 HSPs)
chr2 (145-203)||(35840639-35840697)
chr2 (150-203)||(9735528-9735581)
chr2 (155-203)||(35849467-35849515)
chr2 (151-186)||(11927232-11927267)
[»] chr5 (3 HSPs)
chr5 (155-200)||(4272860-4272905)
chr5 (148-205)||(9634864-9634921)
chr5 (146-200)||(29460713-29460766)
[»] chr7 (2 HSPs)
chr7 (157-205)||(35672094-35672142)
chr7 (151-198)||(28071495-28071542)
[»] chr4 (4 HSPs)
chr4 (145-200)||(5039876-5039931)
chr4 (156-203)||(27456330-27456377)
chr4 (150-203)||(2316932-2316985)
chr4 (151-200)||(26349341-26349390)
[»] chr1 (3 HSPs)
chr1 (150-200)||(30048539-30048589)
chr1 (151-200)||(10363457-10363506)
chr1 (151-200)||(30043071-30043120)
[»] chr3 (1 HSPs)
chr3 (148-185)||(5033419-5033456)


Alignment Details
Target: chr6 (Bit Score: 666; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 240 - 929
Target Start/End: Complemental strand, 25207381 - 25206692
Alignment:
Q  240 ctatgactaggctaaggcaatcatgttactagctggaaatggaactaaaatgcagcaagaaatctctattccttccaaaaaggataatttcattataagc 339  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25207381 ctatgactaggccaaggcaatcatgttactagctggaaatggaactaaaatgcagcaagaaatctctattccttccaaaaaggataatttcattataagc 25207282  T
Q  340 caaccctatccttcaccattgccaagccctattccaatgacctctcatgcaagtactcaaccaaggggaggttcaagtagcaacaatgaagttacaataa 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25207281 caaccctatccttcaccattgccaagccctattccaatgacctctcatgcaagtactcaaccaaggggaggttcaagtagcaacaatgaagttacaataa 25207182  T
Q  440 taagaactttaggacattcaattgccaagtcctctcacaatgacctatctcatctctcatcattgccaagtcctctcccaatgacctctcatgcaagttc 539  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25207181 taagaactttaggacattcaattgccaagtcctctcacaatgacctatctcatctctcatcattgccaagtcctctcccaatgacctctcatgcaagttc 25207082  T
Q  540 ttatcctaagggaggttcaagtagcaacaatgaagttacaataataagatctttaggaccttcaaatgcccctactaaccatttggaatctcctattgtt 639  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25207081 ttatcctaagggaggttcaagtagcaacaatgaagttacaataataagatctttaggaccttcaaatgcccctactaaccatttggaatctcctattgtt 25206982  T
Q  640 gctacttctgtaggattaacacctacaaatgtgattcaaccaggtatattatgcctatctggtctatttattttttagaaaaatactatcaatacattct 739  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25206981 gctacttctgtaggattaacacctacaaatgtgattcaaccaggtatattatgcctatctggtctatttattttttagaaaaatactatcaatacattct 25206882  T
Q  740 tttaacattttattttcaaaatttgttatatttatggtgaaatcgcatggcggttaacgaatagagaggtcgagctgaaaataattcattcaattataaa 839  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||    
T  25206881 tttaacattttattttcaaaatttgttatatttatggtgaaattgcatggcggttaacgaatagagaggtcgagttgacaataattcgttcaattataaa 25206782  T
Q  840 gtgttcaaaaaagagtgtatcactcgcatttttgtattttataaaagctagtacttcttctaatttaggtaaagcacgataataattagc 929  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25206781 gtgttcaaaaaagagtgtatcactcgcatttttgtattttataaaagctagtacttcttctaatttatgtaaagcacgataataattagc 25206692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 8 - 209
Target Start/End: Complemental strand, 25207613 - 25207412
Alignment:
Q  8 ttctataggagtaggaattgttccaaatccaatggtactacacctgctcagttgaccatattttatggtggtactgtttgcgtgtatgatgacatctctc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25207613 ttctataggagtaggaattgttccaaatccaatggtactacacctgctcagttgaccatattttatggtggtacagtttgcgtgtatgatgacatctctc 25207514  T
Q  108 ctgagaaggtaacttttttcaccataaacttatcttaatagcgtagtggaatttgaacaaactgttattttccgcaatctgcgattgacaacattgaatc 207  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25207513 ctgagaaggtaacttttttcaccctaaacttatcttaatagcgtagtggaatttgaacaaactgttattttccgcaatctgcgatcgacaacattgaatc 25207414  T
Q  208 cc 209  Q
    ||    
T  25207413 cc 25207412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 2457309 - 2457356
Alignment:
Q  153 gtggaatttgaacaaactgttattttccgcaatctgcgattgacaaca 200  Q
    ||||||||||||||||||| ||||||| || |||||||||||||||||    
T  2457309 gtggaatttgaacaaactgctattttctgcgatctgcgattgacaaca 2457356  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 24780481 - 24780517
Alignment:
Q  150 gtagtggaatttgaacaaactgttattttccgcaatc 186  Q
    ||||| |||||||||||||||||||||||||||||||    
T  24780481 gtagttgaatttgaacaaactgttattttccgcaatc 24780517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 31696674 - 31696623
Alignment:
Q  149 cgtagtggaatttgaacaaactgttattttccgcaatctgcgattgacaaca 200  Q
    ||||||||||||||||||||| | ||||||| ||||||  ||||||||||||    
T  31696674 cgtagtggaatttgaacaaaccgctattttctgcaatccacgattgacaaca 31696623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 19041621 - 19041670
Alignment:
Q  146 tagcgtagtggaatttgaacaaactgttattttccgcaatctgcgattga 195  Q
    ||||||||  ||||||||| |||||||||||||| || ||||||||||||    
T  19041621 tagcgtagcagaatttgaataaactgttattttctgctatctgcgattga 19041670  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 21923331 - 21923286
Alignment:
Q  158 atttgaacaaactgttattttccgcaatctgcgattgacaacattg 203  Q
    |||||||||||||| ||||||| ||  |||||||||||||||||||    
T  21923331 atttgaacaaactgctattttctgcgttctgcgattgacaacattg 21923286  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 198
Target Start/End: Original strand, 42822676 - 42822723
Alignment:
Q  151 tagtggaatttgaacaaactgttattttccgcaatctgcgattgacaa 198  Q
    ||||||||||||||||||||| |||||||||| |||||| ||||||||    
T  42822676 tagtggaatttgaacaaactgatattttccgctatctgcaattgacaa 42822723  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 5744516 - 5744560
Alignment:
Q  156 gaatttgaacaaactgttattttccgcaatctgcgattgacaaca 200  Q
    |||||||||||||||||||||||| ||||||||| |||| |||||    
T  5744516 gaatttgaacaaactgttattttctgcaatctgcaattggcaaca 5744560  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 11501522 - 11501486
Alignment:
Q  146 tagcgtagtggaatttgaacaaactgttattttccgc 182  Q
    |||| ||||||||||||||||||||||||||||||||    
T  11501522 tagcatagtggaatttgaacaaactgttattttccgc 11501486  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 14730406 - 14730450
Alignment:
Q  156 gaatttgaacaaactgttattttccgcaatctgcgattgacaaca 200  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||    
T  14730406 gaatttgaacaaactgatattttccgcaatccacgattgacaaca 14730450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 26480712 - 26480764
Alignment:
Q  151 tagtggaatttgaacaaactgttattttccgcaatctgcgattgacaacattg 203  Q
    ||||||||||||||||| | |||||||||| |||||||  |||||||||||||    
T  26480712 tagtggaatttgaacaacccgttattttccacaatctgtaattgacaacattg 26480764  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 35840697 - 35840639
Alignment:
Q  145 atagcgtagtggaatttgaacaaactgttattttccgcaatctgcgattgacaacattg 203  Q
    |||||| || ||||||||||||||||| ||| ||||||||||||  |||||||||||||    
T  35840697 atagcgcagcggaatttgaacaaactgctatcttccgcaatctgtaattgacaacattg 35840639  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 9735528 - 9735581
Alignment:
Q  150 gtagtggaatttgaacaaactgttattttccgcaatctgcgattgacaacattg 203  Q
    ||||| |||||||| ||||||||||||||| || |||||| |||||||||||||    
T  9735528 gtagttgaatttgagcaaactgttattttctgctatctgctattgacaacattg 9735581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 35849515 - 35849467
Alignment:
Q  155 ggaatttgaacaaactgttattttccgcaatctgcgattgacaacattg 203  Q
    ||||||||||||||| | |||||||| |||||||| |||||||||||||    
T  35849515 ggaatttgaacaaaccgctattttccacaatctgcaattgacaacattg 35849467  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 186
Target Start/End: Original strand, 11927232 - 11927267
Alignment:
Q  151 tagtggaatttgaacaaactgttattttccgcaatc 186  Q
    ||||||||||||||||||||| ||||||||||||||    
T  11927232 tagtggaatttgaacaaactgctattttccgcaatc 11927267  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 4272860 - 4272905
Alignment:
Q  155 ggaatttgaacaaactgttattttccgcaatctgcgattgacaaca 200  Q
    ||||||||||||||||||||||||||||| ||||| || |||||||    
T  4272860 ggaatttgaacaaactgttattttccgcagtctgcaatggacaaca 4272905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 9634921 - 9634864
Alignment:
Q  148 gcgtagtggaatttgaacaaactgttattttccgcaatctgcgattgacaacattgaa 205  Q
    |||||| ||||||||||||||| | ||||||| | ||||||| |||||||||||||||    
T  9634921 gcgtagcggaatttgaacaaaccgctattttctgtaatctgcaattgacaacattgaa 9634864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 29460713 - 29460766
Alignment:
Q  146 tagcgtagtggaatttgaacaaactgttattttccgcaatctgcgattgacaaca 200  Q
    |||||||||||||||||||||||||| || ||||  ||||||| |||||||||||    
T  29460713 tagcgtagtggaatttgaacaaactgcta-tttcaacaatctgtgattgacaaca 29460766  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 35672094 - 35672142
Alignment:
Q  157 aatttgaacaaactgttattttccgcaatctgcgattgacaacattgaa 205  Q
    |||||||||||| |||||||||| | || ||||||||||||||||||||    
T  35672094 aatttgaacaaattgttattttctgtaacctgcgattgacaacattgaa 35672142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 198
Target Start/End: Original strand, 28071495 - 28071542
Alignment:
Q  151 tagtggaatttgaacaaactgttattttccgcaatctgcgattgacaa 198  Q
    ||||||||||||||||||| | ||||| || |||||||||||||||||    
T  28071495 tagtggaatttgaacaaaccgctatttcccacaatctgcgattgacaa 28071542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 5039876 - 5039931
Alignment:
Q  145 atagcgtagtggaatttgaacaaactgttattttccgcaatctgcgattgacaaca 200  Q
    ||||||| ||||||||||||||||||||||| || | | ||||| |||||||||||    
T  5039876 atagcgtggtggaatttgaacaaactgttatctttcactatctgtgattgacaaca 5039931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 27456330 - 27456377
Alignment:
Q  156 gaatttgaacaaactgttattttccgcaatctgcgattgacaacattg 203  Q
    |||||||||||||||| |||||||||  || |||||||||||||||||    
T  27456330 gaatttgaacaaactgctattttccgtgatgtgcgattgacaacattg 27456377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 2316985 - 2316932
Alignment:
Q  150 gtagtggaatttgaacaaactgttattttccgcaatctgcgattgacaacattg 203  Q
    |||| ||||||||||||||||| ||||||  || |||||| |||||||||||||    
T  2316985 gtagcggaatttgaacaaactgctattttgtgcgatctgcaattgacaacattg 2316932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 26349390 - 26349341
Alignment:
Q  151 tagtggaatttgaacaaactgttattttccgcaatctgcgattgacaaca 200  Q
    ||||||||||||| |||||| |||||||| || || ||||||||||||||    
T  26349390 tagtggaatttgatcaaactattattttctgcgatgtgcgattgacaaca 26349341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 30048589 - 30048539
Alignment:
Q  150 gtagtggaatttgaacaaactgttattttccgcaatctgcgattgacaaca 200  Q
    |||| |||||||||||||||||||||||||| |||| ||| || |||||||    
T  30048589 gtagcggaatttgaacaaactgttattttccacaatttgcaatcgacaaca 30048539  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 10363457 - 10363506
Alignment:
Q  151 tagtggaatttgaacaaactgttattttccgcaatctgcgattgacaaca 200  Q
    |||||||||||||||||| || ||||||||   |||||||||||||||||    
T  10363457 tagtggaatttgaacaaaatgctattttccatgatctgcgattgacaaca 10363506  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 30043071 - 30043120
Alignment:
Q  151 tagtggaatttgaacaaactgttattttccgcaatctgcgattgacaaca 200  Q
    |||||||||||||| |||||| |||||| ||||||||||  |||||||||    
T  30043071 tagtggaatttgaaaaaactgctattttgcgcaatctgcagttgacaaca 30043120  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 5033419 - 5033456
Alignment:
Q  148 gcgtagtggaatttgaacaaactgttattttccgcaat 185  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  5033419 gcgtagcggaatttgaacaaactgctattttccgcaat 5033456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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