View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1807-Insertion-3 (Length: 923)
Name: NF1807-Insertion-3
Description: NF1807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1807-Insertion-3 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 553 - 923
Target Start/End: Original strand, 46145275 - 46145645
Alignment:
| Q |
553 |
gcgaacaaacaagtatgatagtgttgttgtgcccatcagtgtactactacatttaacataatattgtctttagaaatgaattatataaccttgacatttg |
652 |
Q |
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| T |
46145275 |
gcgaacaaacaagtatgatagtgttgttgtgcccatcagtgtactactacatttaacataatattgtctttagaaatgaattatataaccttgacatttg |
46145374 |
T |
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| Q |
653 |
gtatgagtcatagtctcatacggccatacaaacaactagaaatttaattaaatataataaagatgatcaaggccaacaagatacctacaaatatactaaa |
752 |
Q |
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| T |
46145375 |
gtatgagtcatagtctcatacggccatacaaacaactagaaatttaattaaatataataaagatgatcaaggccaacaagatacctacaaatatactaaa |
46145474 |
T |
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| Q |
753 |
ttttttatcttagtttctctcaaacataagagatgtattttaaatttcaacaagcagacactaaaatatcatctcattttgcgcctatcattgtcactta |
852 |
Q |
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| T |
46145475 |
ttttttatcttagtttctctcaaacataagagatgtattttaaatttcaacaagcagacactaaaatatcatctcattttgcgcctatcattgtcactta |
46145574 |
T |
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| Q |
853 |
gtattttcaaattgttggactgcattgttacgaactcttcatagttttcatcattttcttcatcatgtccc |
923 |
Q |
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| T |
46145575 |
gtattttcaaattgttggactgcattgttacaaactcttcatagttttcatcattttcttcatcatgtccc |
46145645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 146 - 488
Target Start/End: Original strand, 46144867 - 46145209
Alignment:
| Q |
146 |
tgatagattaatatcagaagcatttcaagttttcaattgaacctgttttgcatnnnnnnncttccgaagcattgtggtcgtgtaccatcaagttatgatc |
245 |
Q |
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| T |
46144867 |
tgatagattaatatcagaagcatttcaagttttcaattgaacctgttttgcataaaaaaacttccgaagcattgtggtcgtgtaccatcaagttatgatc |
46144966 |
T |
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| Q |
246 |
cactcgttgaattggaccaaaacacgagttctgtatttgataatgagttttataagcaaattttgtacgagtttagaaaaaattcatattgatcaacaat |
345 |
Q |
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| T |
46144967 |
cactcgttgaattggaccaaaacacgagttctgtatttgataatgagttttataagcaaattttgtacgagtttagaaaaaattcatattgatcaacaat |
46145066 |
T |
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| Q |
346 |
tggcttcggattcatcttctagaggggttgttaattgttatgggatcaaagtttttcatgtgtttatttctataagtcactacatatcaatgcataccac |
445 |
Q |
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| T |
46145067 |
tggcttaggattcatcttctagaggggttgttaattgttatgggatcaaagtttttcatgtgtttatttctataagtcactacatatcaatgcataccac |
46145166 |
T |
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| Q |
446 |
aaatcatattacgttgttagtaaatgcatattaagttaaatgg |
488 |
Q |
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| T |
46145167 |
aaatcatattacgttgttagtaaatgcatattaagttaaatgg |
46145209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 46144761 - 46144868
Alignment:
| Q |
7 |
aaatatcatattcagaaaatgaatgtccttcaacaatttcgtgtgcagatataatagcattggatacaagagatgtcgtgtccttatccgaaggacctaa |
106 |
Q |
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| T |
46144761 |
aaatatcatattcagaaaatgaatgtccttcaacaatttcgtgtgcagatataatagcattggatacaagagatgtcgtgtccttatccgaaggacctaa |
46144860 |
T |
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| Q |
107 |
atacgatg |
114 |
Q |
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| T |
46144861 |
atacgatg |
46144868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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