View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1807-Insertion-4 (Length: 801)
Name: NF1807-Insertion-4
Description: NF1807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1807-Insertion-4 |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 440 - 747
Target Start/End: Original strand, 5922332 - 5922627
Alignment:
| Q |
440 |
gtttatttgaaatttgaatataattataaggtaatactttcatcaagtatcaacaaaagaagtttgtgctacaaccaagtctatcaaactctgaaaagat |
539 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5922332 |
gtttatttgaaatttgaatataattacaaggtaatactttcatcaaatatcaacaaaagaagtttgtgctacaaccaaggctatcaaactctgaaaagat |
5922431 |
T |
|
| Q |
540 |
tcaggtggaagatcatagcaacccattccatgattagcaagagatcaacagactagtacattttagaatatgcatatgataatgcatataaaacatgagt |
639 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||| |
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| T |
5922432 |
tcaggtggaagatcatagcaacccattccatgattagcaagagatcaacagactagtacgttttagaat------------atgcatataaaacgtgagt |
5922519 |
T |
|
| Q |
640 |
caatatccaagttttgatacttggtgaatttaaagttcccatggacggtgcatgctattatgatcattagaagaaaactatgttactactaacaagttca |
739 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5922520 |
caatatccaagttttgatacttggtgaatttaaagttcccatggacggtgcatgctattatgatcattagaagaaaactatgttactactaacaagttca |
5922619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 193 - 396
Target Start/End: Original strand, 5921913 - 5922116
Alignment:
| Q |
193 |
aagcaacaaatacacagagaacgaagcttgaagacgaagcaatcaagcacaaaaatgaagaatcaggcacagaatcatgaagattcagtgaagaagatga |
292 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
5921913 |
aagcaacaaatacatagagaacgaagcttgaagacgaagcaatcaggcacaaaaatgaagaatcaagcacataatcatgaagattcagtgaagaagatga |
5922012 |
T |
|
| Q |
293 |
aggagagagggaaaattgcagcggaagttgttagaaaaaatggttatggatcgtaacaaactcccccattggaggagaagaaactgataccatattaaga |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| |
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| T |
5922013 |
aggagagagggaaaattgcagcggaagttgttagaaaaaacggttatggatcgtaacaaactccctcattgaaggagaagaaactgataccatatcaaga |
5922112 |
T |
|
| Q |
393 |
gaga |
396 |
Q |
| |
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|||| |
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| T |
5922113 |
gaga |
5922116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 575 - 746
Target Start/End: Original strand, 5913377 - 5913544
Alignment:
| Q |
575 |
agcaagagatcaacagactagtacattttagaatatgcatatgataatgcatataaaacatgagtcaatatccaagttttgatacttggtgaatttaaag |
674 |
Q |
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||||||||||| |||||||||||| ||||| |||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| | |
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| T |
5913377 |
agcaagagatctacagactagtacgttttacaatatgtatatgataatgcatataaaacgtgagtcaatgtccaagttttgatacttggtgaatttaatg |
5913476 |
T |
|
| Q |
675 |
ttcccatggacggtgcatgctattatgatcattagaagaaaactatgttactactaacaagttcaaattgct |
746 |
Q |
| |
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||||| ||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
5913477 |
ttcccgtggacgg----tgctattatgatcattaggagaaaactatgttactcctaacaagttcaaattgct |
5913544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 5921728 - 5921846
Alignment:
| Q |
8 |
gaaccatcaagcttaggagaaacgattaaagatgaaggaccttcacttggatgcacgtaaaatggagattcttgatcaggaccttgattacgaggagcca |
107 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5921728 |
gaaccatcaagcttaggagaaacaattaaagatgaaggaccttcacttggattcacgtgaaatggagattcttgatcaggaccttgattacgaggagcca |
5921827 |
T |
|
| Q |
108 |
tggtgaagaagaatcaatg |
126 |
Q |
| |
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||||||||||||||||||| |
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| T |
5921828 |
tggtgaagaagaatcaatg |
5921846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 790
Target Start/End: Original strand, 5922658 - 5922702
Alignment:
| Q |
745 |
ctttaagattcaatggtaaaaagatagggcttgaacttttggggtt |
790 |
Q |
| |
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||||||||| |||||||||||||||| |||||||||||||| |||| |
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| T |
5922658 |
ctttaagatccaatggtaaaaagata-ggcttgaacttttgaggtt |
5922702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 2e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 192 - 412
Target Start/End: Original strand, 20326168 - 20326387
Alignment:
| Q |
192 |
gaagcaacaaatacacagagaacgaagcttgaagacgaagcaatcaagcacaaaaatga-agaatcaggcacagaatcatgaagattcagtgaagaagat |
290 |
Q |
| |
|
|||||||||||| | |||| ||| |||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||| |||||||||| |
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| T |
20326168 |
gaagcaacaaattctcagaaaacaaagcttgaagacgaagcaatcaagcacaaaaaaaagagaatcaatcacagaatcatgaagattcaatgaagaagat |
20326267 |
T |
|
| Q |
291 |
gaaggagagagggaaaattgcagcggaagttgttagaaaaaatggttatggatcgtaacaaactcccccattggaggagaagaaactgataccatattaa |
390 |
Q |
| |
|
|| ||| | ||| ||||||||||||||||| ||||||||| | |||||||||| |||||||||| || |||| ||||||||||||||||||||||||| |
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|
| T |
20326268 |
gatggaaaaaggaaaaattgcagcggaagtagttagaaaaggttgttatggatcttaacaaactctccaattgaaggagaagaaactgataccatatta- |
20326366 |
T |
|
| Q |
391 |
gagagaaagaatatgaatgaaa |
412 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
20326367 |
-agagaaagaatatgaatgaaa |
20326387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 20326030 - 20326145
Alignment:
| Q |
8 |
gaaccatcaagcttaggagaaacgattaaagatgaaggaccttcacttggatgcacgtaaaatggagattcttgatcaggaccttgattacgaggagcca |
107 |
Q |
| |
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||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
20326030 |
gaaccatcaagtttaggagaaacgattaacgatgaaggaccttcacttggatgaacgtaaaaaggagattcttgatcaggaccttgattacgaggaggca |
20326129 |
T |
|
| Q |
108 |
tggtgaagaagaatca |
123 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
20326130 |
tggtgaagaagaatca |
20326145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 356 - 417
Target Start/End: Original strand, 36164903 - 36164964
Alignment:
| Q |
356 |
ccccattggaggagaagaaactgataccatattaagagagaaagaatatgaatgaaaagtgt |
417 |
Q |
| |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36164903 |
cccccttgaaggagaagaaactgataccatattaagagagaaagaatatgaatgaaaagtgt |
36164964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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