View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1807-Insertion-7 (Length: 835)
Name: NF1807-Insertion-7
Description: NF1807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1807-Insertion-7 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] chr2 (5 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
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Alignment Details
Target: chr6 (Bit Score: 427; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 357 - 835
Target Start/End: Complemental strand, 28910223 - 28909746
Alignment:
| Q |
357 |
attggaaaattggttggaaggtgcatgcaggtctactaaggtatgggaaattattatcatttcataatttgcataatgttgtaagatggtgccttttaat |
456 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28910223 |
attgaaaaattggttggaaggtgcatgcaggtctactaaggtatgggaaattattatcatttcataatttgcataacgttgtaagatggtgccttttaat |
28910124 |
T |
|
| Q |
457 |
taacgagagaatgagggtcagagaaagtgttgttggcactcttctaaaaagtgtgatggactaattcattataacaaaataaattaaataatgttgttgc |
556 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28910123 |
taacgagagaatgagggttagagaaagtgttgttggcactcttctaaaaagtgtgatggactaattcattataacaaaataaattaaataatgttgttgc |
28910024 |
T |
|
| Q |
557 |
gacagagaatgacttataccattccattaaaaatatgttcaatacaatgcggtatatcaattagaacttggaaactagctggtgatgcggccgcctttgc |
656 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
28910023 |
gacagagaatgacttatatcattttattaaaaatatgttcaatacaatgcggtatatcaattagaacttggaaactagctggagatgcggccgcc-ttgc |
28909925 |
T |
|
| Q |
657 |
caagactacagacaacctcatatttttgtctctgaattaactcaagacagaagtttgtgtaaaaattggaatattatctccaaacatgtaacattcagtc |
756 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28909924 |
caagactacagacaacctcatttgtttgtctctgaattaactcaagacagaagtttgtgtaaaaattggaatattatctccaaacatgtaacattcagtc |
28909825 |
T |
|
| Q |
757 |
tagttgatacaaagctatcaacaattttttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatat |
835 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28909824 |
tagttgatacaaagctatccacaattttttaggagacaagcgaatgttgtcactcatagtttcgctagggtgtcaatat |
28909746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 323
Target Start/End: Complemental strand, 28910603 - 28910290
Alignment:
| Q |
8 |
agaattaccatgtggaagatgaaannnnnnnaagaaaggccaatttaatgaatgcattacatttttgtgtttacaagatggagaatgatttaaacaagaa |
107 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28910603 |
agaattaccatgtagaagatgaaaaatttctaagaaaggccaatgtaatgaatgcattacattattgtgtttacaagatgaagaatgatttaaacaagaa |
28910504 |
T |
|
| Q |
108 |
ggatactaatctaaagctctcctctcaagaaaatgacaagattaactctgcaattaaaaaggacacaaatttgcttgaaattagtaaccagcagagtgaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28910503 |
ggatactaatctaaagctctcctctcaagaaaatgacaagattaactctgcaattaaaaaggacacaaatttgcttgaaattagtaaccagcagagtgaa |
28910404 |
T |
|
| Q |
208 |
atagatattcttgaaaatcatctgaaggatcttgaaagtattgttgcttgcatatcagtatttgatttcagttttccttcaacaatctcaaaatgaaaac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28910403 |
atagatattcttgaaaatcatctgaaggatcttgaaagtattgttgcttgcatatcagtatttgatttcagttttccttcaacaatctcaaaatgaaa-- |
28910306 |
T |
|
| Q |
308 |
atggctttgacaaatt |
323 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
28910305 |
atggctttgacaaatt |
28910290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 248
Target Start/End: Original strand, 12488631 - 12488834
Alignment:
| Q |
41 |
gaaaggccaatttaatgaatgcattacatttttgtgtttacaagatggagaatgatttaaacaagaaggatactaatctaaagctctcctctcaagaaaa |
140 |
Q |
| |
|
|||| |||||||||||||||| |||| | | ||| ||||||||||| |||||| | |||| | ||||||| ||| |||||||||| ||| ||||||| |
|
|
| T |
12488631 |
gaaaagccaatttaatgaatggattagactattgcatttacaagatgaagaatgctctaaagaggaaggatgttaaattaaagctctcatctaaagaaaa |
12488730 |
T |
|
| Q |
141 |
tgacaagattaactctgcaattaaaaaggacacaaatttgcttgaaattagtaaccagcagagtgaaatagatattcttgaaaatcatctgaaggatctt |
240 |
Q |
| |
|
||| ||||| || ||| |||| |||| |||||||||| |||| |||| | | || ||||||||| || |||| ||||||||| ||||||| ||| |
|
|
| T |
12488731 |
tgataagatcaatcatgcgattacgaaggccacaaatttg-ttga---tagtgaaaaacaaagtgaaatacatgttctggaaaatcatttgaaggagctt |
12488826 |
T |
|
| Q |
241 |
gaaagtat |
248 |
Q |
| |
|
|| ||||| |
|
|
| T |
12488827 |
gagagtat |
12488834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 2e-45; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 43 - 242
Target Start/End: Complemental strand, 3146458 - 3146262
Alignment:
| Q |
43 |
aaggccaatttaatgaatgcattacatttttgtgtttacaagatggagaatgatttaaacaagaaggatactaatctaaagctctcctctcaagaaaatg |
142 |
Q |
| |
|
||||||||| |||||||||||||| ||| |||||||||||||||| | |||| |||||| ||||||||| ||| |||| ||||||||||||||||||| |
|
|
| T |
3146458 |
aaggccaatgtaatgaatgcattagattattgtgtttacaagatgaaaaatgctttaaagaagaaggatgtgaatataaatctctcctctcaagaaaatg |
3146359 |
T |
|
| Q |
143 |
acaagattaactctgcaattaaaaaggacacaaatttgcttgaaattagtaaccagcagagtgaaatagatattcttgaaaatcatctgaaggatcttga |
242 |
Q |
| |
|
||||||| || |||||||| | ||||| ||||| ||| ||||| ||||| ||||||||||||||||||| ||||||||||||| |||||||| ||||| |
|
|
| T |
3146358 |
acaagatcaattctgcaatcacaaaggccacaagtttacttga---tagtacccagcagagtgaaatagatgttcttgaaaatcacctgaaggagcttga |
3146262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 43 - 248
Target Start/End: Original strand, 8640675 - 8640878
Alignment:
| Q |
43 |
aaggccaatttaatgaatgcattacatttttgtgtttacaagatggagaatgatttaaacaagaaggatactaatctaaagctctcctctc-aagaaaat |
141 |
Q |
| |
|
||||||||||||||||||| |||| | | ||| ||||||||||| |||||| | |||| || ||||||| ||| ||||||||||| |||| |||||||| |
|
|
| T |
8640675 |
aaggccaatttaatgaatggattagactattgcatttacaagatgaagaatgctctaaagaataaggatattaaactaaagctctcttctcaaagaaaat |
8640774 |
T |
|
| Q |
142 |
gacaagattaactctgcaattaaaaaggacacaaatttgcttgaaattagtaaccagcagagtgaaatagatattcttgaaaatcatctgaaggatcttg |
241 |
Q |
| |
|
|||||||| || | |||||| |||| ||||||||||||||| || || | || ||||||||| || |||| ||||||||||||||||| |||| |
|
|
| T |
8640775 |
gacaagatcaatcatacaattacgaaggccacaaatttgcttga---ctgtgacaaacaaagtgaaatatatgttctggaaaatcatctgaaggagcttg |
8640871 |
T |
|
| Q |
242 |
aaagtat |
248 |
Q |
| |
|
| ||||| |
|
|
| T |
8640872 |
agagtat |
8640878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 785 - 835
Target Start/End: Complemental strand, 38176336 - 38176286
Alignment:
| Q |
785 |
ttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatat |
835 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38176336 |
ttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatat |
38176286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 389 - 430
Target Start/End: Complemental strand, 8645602 - 8645561
Alignment:
| Q |
389 |
ctactaaggtatgggaaattattatcatttcataatttgcat |
430 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
8645602 |
ctactaaggtatgggaaactattaccatttcataatttgcat |
8645561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 3145997 - 3145941
Alignment:
| Q |
243 |
aagtattgttgcttgcatatcagtatttgatttcagttttccttcaacaatctcaaa |
299 |
Q |
| |
|
|||||||| |||||| |||| || |||||||||||||||| ||||||| |||||||| |
|
|
| T |
3145997 |
aagtattgatgcttggatatgagcatttgatttcagtttttcttcaacgatctcaaa |
3145941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 785 - 835
Target Start/End: Original strand, 1527285 - 1527335
Alignment:
| Q |
785 |
ttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatat |
835 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1527285 |
ttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatat |
1527335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 791 - 835
Target Start/End: Complemental strand, 48799123 - 48799079
Alignment:
| Q |
791 |
gacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatat |
835 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
48799123 |
gacaagcgaatgttgtcgcttatagtttcgttagggtgtcaatat |
48799079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 46 - 242
Target Start/End: Complemental strand, 43744004 - 43743811
Alignment:
| Q |
46 |
gccaatttaatgaatgcattacatttttgtgtttacaagatggagaatgatttaaacaagaaggatactaatctaaagctctcctctcaagaaaatgaca |
145 |
Q |
| |
|
|||||| |||||||||||||| || || ||||||||| || ||||| | |||| || |||||| ||| ||||||| || ||||||| || ||||| |
|
|
| T |
43744004 |
gccaatgtaatgaatgcattagatgaatgggtttacaagttgaggaatgctgtaaagaataaggatgttaaattaaagctttcttctcaagtaactgaca |
43743905 |
T |
|
| Q |
146 |
agattaactctgcaattaaaaaggacacaaatttgcttgaaattagtaaccagcagagtgaaatagatattcttgaaaatcatctgaaggatcttga |
242 |
Q |
| |
|
|||| | |||||||||| |||| |||||||||||| || || | |||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
43743904 |
agatcatttctgcaattacaaagaccacaaatttgctcgacgataat---cagcagagtgaaatagatgttcttgaaaatcatctgaaggagcttga |
43743811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 785 - 835
Target Start/End: Complemental strand, 8618413 - 8618363
Alignment:
| Q |
785 |
ttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatat |
835 |
Q |
| |
|
||||||||||||||||||||||||||||||| || || ||||||||||||| |
|
|
| T |
8618413 |
ttaggagacaagcgaatgttgtcgctcatagcttagcaagggtgtcaatat |
8618363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 43441324 - 43441274
Alignment:
| Q |
192 |
taaccagcagagtgaaatagatattcttgaaaatcatctgaaggatcttga |
242 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
43441324 |
taaccagcaaagtgaaatagatgttcttgaaaatcatctgaaggagcttga |
43441274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 185
Target Start/End: Complemental strand, 43445813 - 43445734
Alignment:
| Q |
106 |
aaggatactaatctaaagctctcctctcaagaaaatgacaagattaactctgcaattaaaaaggacacaaatttgcttga |
185 |
Q |
| |
|
||||||| ||| |||||||||| ||| ||| || ||||||||| |||| |||||||| |||| ||||||||||||||| |
|
|
| T |
43445813 |
aaggatattaaattaaagctctcgtctaaagtaactgacaagatcaactatgcaattacaaagaccacaaatttgcttga |
43445734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 785 - 835
Target Start/End: Complemental strand, 28626450 - 28626400
Alignment:
| Q |
785 |
ttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatat |
835 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28626450 |
ttaggagacaagcgaatgttgtcgctcatagtttcgctaaggtgtcaatat |
28626400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 785 - 835
Target Start/End: Complemental strand, 4318816 - 4318766
Alignment:
| Q |
785 |
ttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatat |
835 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4318816 |
ttaggagacaagtaaatgttgtcgctcatagtttcgctagggtgtcaatat |
4318766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 163
Target Start/End: Original strand, 16658496 - 16658614
Alignment:
| Q |
42 |
aaaggccaatttaatgaatgcattacatttttgtgtttacaagatggagaatgatttaaacaagaaggatactaatctaaagctctcctctcaagaaaat |
141 |
Q |
| |
|
||||||||| ||||||||||||| ||| |||||||||||| ||| |||||| |||||| ||| ||| ||| ||||||||||||||||||||| | |
|
|
| T |
16658496 |
aaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaaa---gaaagatgtgaatttaaagctctcctctcaagaaatt |
16658592 |
T |
|
| Q |
142 |
gacaagattaactctgcaatta |
163 |
Q |
| |
|
|| ||||| ||| |||||||| |
|
|
| T |
16658593 |
gagaagatcaacaatgcaatta |
16658614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 785 - 835
Target Start/End: Original strand, 6409614 - 6409664
Alignment:
| Q |
785 |
ttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatat |
835 |
Q |
| |
|
|||||||| |||||||| ||||||||| |||||||||||| |||||||||| |
|
|
| T |
6409614 |
ttaggagagaagcgaatattgtcgctcgtagtttcgctagagtgtcaatat |
6409664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 785 - 835
Target Start/End: Original strand, 34212788 - 34212838
Alignment:
| Q |
785 |
ttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatat |
835 |
Q |
| |
|
|||||||||||||||||||||||||| |||| || || || |||||||||| |
|
|
| T |
34212788 |
ttaggagacaagcgaatgttgtcgcttatagcttagcaagagtgtcaatat |
34212838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 236
Target Start/End: Complemental strand, 28219109 - 28218919
Alignment:
| Q |
43 |
aaggccaatttaatgaatgcattacatttttgtgtttacaagatggagaatgatttaaacaagaaggatactaatctaaagctctcctctcaagaaaatg |
142 |
Q |
| |
|
||||||||| | |||||||||||| || || ||||||||| || ||||| | |||| || ||||||| || || |||| || ||| || ||| || |
|
|
| T |
28219109 |
aaggccaatgtcatgaatgcattagatgactgcgtttacaagttgaggaatgctctaaagaataaggatattagattacagctgtcttctaaaaaaattg |
28219010 |
T |
|
| Q |
143 |
acaagattaactctgcaattaaaaaggacacaaatttgcttgaaattagtaaccagcagagtgaaatagatattcttgaaaatcatctgaagga |
236 |
Q |
| |
|
||||||| ||||||| ||||| |||| |||||||| | ||| || ||||||| ||||||||||| || |||||||||||||||||||||| |
|
|
| T |
28219009 |
acaagatcaactctgaaattacgaaggcaacaaatttccatga---tactaaccagaagagtgaaatacatgttcttgaaaatcatctgaagga |
28218919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 785 - 835
Target Start/End: Complemental strand, 22497739 - 22497689
Alignment:
| Q |
785 |
ttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatat |
835 |
Q |
| |
|
||||||||||||||||||||||| |||||| || || ||||||||||||| |
|
|
| T |
22497739 |
ttaggagacaagcgaatgttgtcactcataacttagcaagggtgtcaatat |
22497689 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 785 - 835
Target Start/End: Original strand, 46342986 - 46343036
Alignment:
| Q |
785 |
ttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatat |
835 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || ||| ||||||||| |
|
|
| T |
46342986 |
ttaggagacaagcgaatgttgtcgctcatatcttagcaaggatgtcaatat |
46343036 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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