View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1807-Insertion-8 (Length: 787)
Name: NF1807-Insertion-8
Description: NF1807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1807-Insertion-8 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 599; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 7 - 787
Target Start/End: Original strand, 39385004 - 39385769
Alignment:
| Q |
7 |
agaagtgattttcagaaaatatttcatccaacacccaaagaagtctgaattcctgctagnnnnnnnacttggttgtaagattgttcttcaactttgaggt |
106 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
39385004 |
agaagtgattttcagaaaatattccatccaacacccaaagaagtctgaattcctgctagtttttttatttggttgtaagattgttcttcaactttgaggt |
39385103 |
T |
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| Q |
107 |
actcagctccagactttggcacggagaaagaagtctaaattccatnnnnnnnnnnnnnnnnnnnnggctctatagacaccaaaaacactatcaattgtta |
206 |
Q |
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| T |
39385104 |
actcagctccagactttggcacggagaaagaagtctaaattccataaaaaaaaaaa---------ggctctatagacaccaaaaacactatcaattgtta |
39385194 |
T |
|
| Q |
207 |
ggtttctagaggnnnnnnngaatgagaaactaagttactttagcgtaccttcattgatatttccaaattaagtatcactgatcatattaagtttcattat |
306 |
Q |
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| T |
39385195 |
ggtttctagaggtttttttgaatgagaaactaagttactttagcgtaccttcattgatatttccaaattaagtatcactgatcatattaagtttcattat |
39385294 |
T |
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| Q |
307 |
agtactttattagatgttataaactggggattgtttattcagaatatatacacaaatgattttnnnnnnn-ttgagccccaaatgaaggagaccccagca |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39385295 |
agtactttattagatgttataaactggggattgtttattcagaatatatacacaaatgattttaaaaaaaattgagccccaaatgaaggagaccccagca |
39385394 |
T |
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| Q |
406 |
caaaacagagaacccttttgtaacagtaaacaaattgatcaaattatcacttcaatctcagttacaaaaacacatcaagtagaaaactagagaattttaa |
505 |
Q |
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| T |
39385395 |
caaaacagagaacccttttgtaacagtaaacaaattgatcaaattatcacttcaaactcagttacaaaaacacatcaagtagaaaactagagaattttaa |
39385494 |
T |
|
| Q |
506 |
accacatttactgcatatctatggagcagtcttaatcaacagagatgattctcacaaatattacataaagctggtttcccttctttaatttcaaaagaaa |
605 |
Q |
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| T |
39385495 |
accacatttactgcatatctatggagcagtcttaatcaacagagatgattctcacaaatattacataaagctggtttcc---ctttaatttcaaaagaaa |
39385591 |
T |
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| Q |
606 |
tataatttccttacaaagatgtttaggtgtataaagatttacattttaaaaatggttatttagttaaagcttttatacattcaaaatttcagtaacatgt |
705 |
Q |
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| T |
39385592 |
tataatttccttacaaagatgtttaggtgtataaagatttacattttaaaaatggttatttagttaaagcttttatacattcaaaatttcagtaacatgt |
39385691 |
T |
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| Q |
706 |
ggcatgtactccaaataactagtttgtatatgaaccataataacaaattcaagcctctaaaaggaaataaataaaaacacca |
787 |
Q |
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| T |
39385692 |
ggcatgtactc----taactactttgtatatgaaccataataacaaattcaagcctctaaaaggaaataaataaaaacacca |
39385769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 402 - 575
Target Start/End: Complemental strand, 39218241 - 39218066
Alignment:
| Q |
402 |
agcacaaaacagagaacccttttgtaacagtaaacaaattgatcaaattatcacttcaatctcagttacaaaaacacatcaagtagaaaacta---gaga |
498 |
Q |
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||||||||||||||||| |||||| |||||| ||||| |||| |||||| || |||||| ||||||||||| ||||| |||| ||||||| |||| |
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| T |
39218241 |
agcacaaaacagagaactattttgtcacagtagacaaaatgataaaattagcatttcaatttcagttacaaacacacaccaaggc-aaaactataggaga |
39218143 |
T |
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| Q |
499 |
attttaaaccacatttactgcatatctatggagcagtcttaatcaacagagatgattctcacaaatattacataaag |
575 |
Q |
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| T |
39218142 |
attttaaaccacatagactgcagatctatgaagcagtcttagtcaacagagataattccgataaatattacataaag |
39218066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 618 - 739
Target Start/End: Complemental strand, 39165159 - 39165039
Alignment:
| Q |
618 |
acaaagatgtttaggtgtataaagatttacattttaaaaatggttatttagttaaagcttttatacattcaaaatttcagtaacatgtggcatgtactcc |
717 |
Q |
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| T |
39165159 |
acaaagacgttcaagtgtataaagatc-acatctaaaaaatggttatatagttaaaccttttatacattcaaaactttagtaaaatgtgacatgtactcc |
39165061 |
T |
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| Q |
718 |
aaataactagtttgtatatgaa |
739 |
Q |
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| T |
39165060 |
aaataactggtttgtatatgaa |
39165039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 39180635 - 39180566
Alignment:
| Q |
73 |
acttggttgtaagattgttcttcaactttgaggtactcagctccagactttggcacggagaaagaagtct |
142 |
Q |
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| T |
39180635 |
acttggttgtaagattattcttcaactttgaggtactcagttccagactttggcactgagaaagaagtct |
39180566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 672 - 735
Target Start/End: Complemental strand, 39372972 - 39372909
Alignment:
| Q |
672 |
aagcttttatacattcaaaatttcagtaacatgtggcatgtactccaaataactagtttgtata |
735 |
Q |
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| T |
39372972 |
aagcttttatacattctaaactttagtaacatgtggcatgtactccaaataactagtttgtata |
39372909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 653 - 787
Target Start/End: Original strand, 39203686 - 39203829
Alignment:
| Q |
653 |
aaaaatggttatttagttaaagcttttatacattcaaaatttcagtaacatgtggcatgtactccaaataactagtttgtatat--gaac-------cat |
743 |
Q |
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|||||||||||| |||||||| |||||||| |||||||| || |||| ||||| |||||||||||| |||||||| ||||||| |||| ||| |
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| T |
39203686 |
aaaaatggttatatagttaaatcttttatatattcaaaactttagtagaatgtgacatgtactccaagtaactagtctgtatatgagaacatttccacat |
39203785 |
T |
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| Q |
744 |
aataacaaattcaagcctctaaaaggaaataaataaaaacacca |
787 |
Q |
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| T |
39203786 |
aataacaaatttaagcctttaaaattaaaaaaataaaaacacca |
39203829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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