View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18070_high_2 (Length: 555)
Name: NF18070_high_2
Description: NF18070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18070_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 9 - 544
Target Start/End: Complemental strand, 46893549 - 46893009
Alignment:
| Q |
9 |
gaagaaaatatgatgatgtttgatcttgcaaggtcaaggcttgggtttactaattccttgaactcccatggaatgaagtgttctgatctctttgacttca |
108 |
Q |
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| T |
46893549 |
gaagaaaatatgatgatgtttgatcttgcaaggtcaaggcttgggtttactaattccttgaactcccatggaatgaagtgttctgatctctttgacttca |
46893450 |
T |
|
| Q |
109 |
ccaatgctccatagatctcatcacactttatgtgtgtgtgagacagagagggatatagagtgtatgcttaattattaagtataagcatctactttgttgt |
208 |
Q |
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| T |
46893449 |
ccaatgctccatagatctcatcac--tttatgtgtgtg--agacagagagggatatagagtatatgcttaattattaagtataagcatctactttgttgt |
46893354 |
T |
|
| Q |
209 |
tgttttcatggttaataaaagcactagtaaagaataaaatcttgaagtgatgaatgataaaagacacttcttgtgttgtttagacacaaatttgttgttt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46893353 |
tgttttcatggttaataaaagcactagtaaagaataaaatcttgaagtgatgaatgataaaagacacttcttgtgttgtttagacacaaatttgttgttt |
46893254 |
T |
|
| Q |
309 |
cagtagaccgtttttggtataagtgcttttttaat------acnnnnnnngaattttaaaatgtgtttaacaagacaaggcgacaaacaaccgctaagtt |
402 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46893253 |
cagtagaccgtttttggtataagtgcttttttaataaaaaaaaaaaaaatgaattttaaaatgtgtttaataagacaaggcgacaaacaaccgctaagtt |
46893154 |
T |
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| Q |
403 |
taaggtttagtatcgtgtgaaaacatagtacttgtgatccattgccgatgcaaatgttgattcataaactttgattcct---aagtgtttgtaaatcagt |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
46893153 |
taaggtttagtatcgtgtgaaaacatagtacttgtgatccattgccgatgcaaatgttgattcataaactttgattcctcccaagtgtttgtaaatcagt |
46893054 |
T |
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| Q |
500 |
gtcactacagtctttgaatgaagcgaaactacaacatctttcatg |
544 |
Q |
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| T |
46893053 |
gtcactacagtcttcgaatgaagcgaaactacaacatctttcatg |
46893009 |
T |
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