View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18070_low_1 (Length: 604)
Name: NF18070_low_1
Description: NF18070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18070_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 492; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Original strand, 42082963 - 42083527
Alignment:
| Q |
1 |
tgaatgtttcgagataccatatcaaacctgtcaaactgcattgagtaggatgcacggccctctgtcagcaccctaagtgtaccgacatacataaacatct |
100 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42082963 |
tgaatgtttcgagataccgtatcaaacctgtcaaactgcattgagtaggatgcacggccctctgtcagcaccctaagtgtaccgacatacagaaacatct |
42083062 |
T |
|
| Q |
101 |
cagcaatgggtactaatgactcaaccacctgttttcacaaccaccaaaaggaagaaaacaatattcagttctagatgatacaacaaacacaactgagaca |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42083063 |
cagc----------------------acctgttttcacaaccaccaaaaggaagaaaacaatattcagttctagatgatacaacaaacacaactgagaca |
42083140 |
T |
|
| Q |
201 |
ttgacaacgataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcggacaccagatacgtctttcttgaatatgaagcatcggtgctaca |
300 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
42083141 |
ttgacatcgataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcggacaccagatacgtctttctttaatatgaagcatcggtgctgca |
42083240 |
T |
|
| Q |
301 |
tagctttcaaataattaatatcttaaaatttaataaatgaacatggacgataaggttttgtgacttacgtagagtttatctggtttctcactaacactta |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42083241 |
tagctttcaaataattaatatcttaaaatttaataaatgaacatggacgataaggttttgtgacttacgtagagtttatctggtttctcaccaacactta |
42083340 |
T |
|
| Q |
401 |
tgatttggcctcttcttctgctgagatcaccaagtacatcttcataatgttcttcaggagtaacaacttcaagtttcattgtaggttcaagcattaatgg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42083341 |
tgatttggcctcttcttctgctgagatcaccaagtacatcttcataatgttcttcaggagtaacaacttcaagtttcattgtaggttcaagcattaatgg |
42083440 |
T |
|
| Q |
501 |
tttggcttttctcattccttccataaaagctaggcttgctgccaactggaatgccttcacacttgaatccacatcatggtaagtact |
587 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42083441 |
tttggcttttctcattccttccataaaagctaggcttgctgccaactggaatgccttcacacttgaatccacatcatggtaagtact |
42083527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 198 - 583
Target Start/End: Original strand, 42086665 - 42087040
Alignment:
| Q |
198 |
acattgacaacgataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcggacaccagatacgtctttcttgaatatgaagcatcggtgct |
297 |
Q |
| |
|
||||||||| | |||| ||||| ||||||||| |||||||||||||||||||||| | |||||||||||||||| || ||||||||| ||| |||| |
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| T |
42086665 |
acattgacatcaataacaattttaaaaatggatgaaattgaatgtaactacaagtattggacaccagatacgtcatt----aatatgaagtgtcg-tgct |
42086759 |
T |
|
| Q |
298 |
acatagctttcaaataattaatatcttaaaatttaataaatgaacatggacgataaggttttgtgacttacgtagagtttatctggtttctcactaacac |
397 |
Q |
| |
|
||||||||||||||| || | ||| |||||||||| ||| ||||||| || | ||||||||||||||| | |||| | ||||||| |||| || || |
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| T |
42086760 |
acatagctttcaaatcat----accttcaaatttaatatatgcacatgga-gaaagggttttgtgacttaccttgagtccacctggtttgtcaccaaaac |
42086854 |
T |
|
| Q |
398 |
ttatgatttggcctcttcttctgctgagatcaccaagtacatcttcataatgttcttcaggagtaacaacttcaagtttcattgtaggttcaagcattaa |
497 |
Q |
| |
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| ||||||||||||||||| | |||||||||||| ||||||| | ||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
42086855 |
tattgatttggcctcttcttgagttgagatcaccaattacatctcctaaatgttcttcaggagtaacaacttcaactttcattataggttcaagcattct |
42086954 |
T |
|
| Q |
498 |
tggtttggcttttctcattccttccataaaagctaggcttgctgccaactggaatgccttcacacttgaatccacatcatggtaag |
583 |
Q |
| |
|
||| ||||||||| ||||||||| ||||||| ||||||||||||||||| ||| |||||||||||| ||||||||||||| |
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|
| T |
42086955 |
cggtccggcttttcttattccttcccgaaaagctcctcttgctgccaactggaaagccaacacacttgaatctacatcatggtaag |
42087040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 42086445 - 42086611
Alignment:
| Q |
1 |
tgaatgtttcgagataccatatcaaacctgtcaaactgcattgagtaggatgcacggccctctgtcagcaccctaagtgtaccgacatacataaacatct |
100 |
Q |
| |
|
||||||| | ||| ||||| ||||||| || | || ||||| ||||| |||||||| |||| ||||| | | || ||||||| ||||||| |||||||| |
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|
| T |
42086445 |
tgaatgtgttgaggtaccacatcaaacatggctaattgcatagagtatgatgcacgaccctttgtcatccctcttagtgtactgacatactgaaacatct |
42086544 |
T |
|
| Q |
101 |
cagcaatgggtactaatgactcaaccacctgttttcacaaccaccaaaaggaagaaaacaatattcagttcta |
173 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
42086545 |
cagcaagaggtactaatgaatcaaccacctgtttt------caccaaaaggaagaaaacaatgttcagttcta |
42086611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 482 - 582
Target Start/End: Complemental strand, 29242508 - 29242409
Alignment:
| Q |
482 |
taggttcaagcattaatggtttggcttttctcattccttccataaaagctaggcttgctgccaactggaatgccttcacacttgaatccacatcatggta |
581 |
Q |
| |
|
|||||||||||||| ||| ||||||||| |||||||| |||| || | |||||||||||||| || ||| |||||||||||||||||||||||| |
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|
| T |
29242508 |
taggttcaagcattttcggtccggcttttcttattccttcttgaaaaactcgtcttgctgccaactgaaa-gccaacacacttgaatccacatcatggta |
29242410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 22284533 - 22284482
Alignment:
| Q |
209 |
gataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcggaca |
260 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||| || |||||||||| |
|
|
| T |
22284533 |
gataataatttgaaaaatggaaaaatttgaatgtaactgcatgtgtcggaca |
22284482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 37603915 - 37603961
Alignment:
| Q |
203 |
gacaacgataataatttgaaaaatggaagaaattgaatgtaactaca |
249 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
37603915 |
gacaccgataacaatttgaaaaatggaagaaattgaatgtaaataca |
37603961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 3262022 - 3262086
Alignment:
| Q |
192 |
actgagacattgacaacgataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcg |
256 |
Q |
| |
|
||||| ||||||||| |||||||||| ||||| |||||||||||| ||||||||| |||||| |
|
|
| T |
3262022 |
actgacacattgacatttataataattttcaaaatagaagaaattgaaagtaactacatgtgtcg |
3262086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 6933139 - 6933194
Alignment:
| Q |
192 |
actgagacattgacaacgataataatttgaaaaatggaagaaattgaatgtaacta |
247 |
Q |
| |
|
||||| |||| |||| ||||| || ||||||||||||||||||||||| ||||||| |
|
|
| T |
6933139 |
actgacacatcgacaccgatagtattttgaaaaatggaagaaattgaaagtaacta |
6933194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 18626931 - 18626976
Alignment:
| Q |
209 |
gataataatttgaaaaatggaagaaattgaatgtaactacaagtgt |
254 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||| |||||||| |||| |
|
|
| T |
18626931 |
gataataatttgaaaactggaagaaactgaatataactacatgtgt |
18626976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 30922528 - 30922574
Alignment:
| Q |
203 |
gacaacgataataatttgaaaaatggaagaaattgaatgtaactaca |
249 |
Q |
| |
|
||||| |||||||||| |||||||| || |||||||||||||||||| |
|
|
| T |
30922528 |
gacaatgataataattagaaaaatgcaataaattgaatgtaactaca |
30922574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 8217086 - 8217034
Alignment:
| Q |
198 |
acattgacaacgataataatttga-aaaatggaagaaattgaatgtaactaca |
249 |
Q |
| |
|
|||| ||||||||||||||||| | ||||| |||| ||||||||||||||||| |
|
|
| T |
8217086 |
acatagacaacgataataattttagaaaatagaaggaattgaatgtaactaca |
8217034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 19629033 - 19629069
Alignment:
| Q |
209 |
gataataatttgaaaaatggaagaaattgaatgtaac |
245 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
19629033 |
gataatactttgaaaaatggaagtaattgaatgtaac |
19629069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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