View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18070_low_3 (Length: 539)
Name: NF18070_low_3
Description: NF18070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18070_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Complemental strand, 38584155 - 38583632
Alignment:
| Q |
1 |
aaaaagcttttaccggtcgatgcggagtctcggagactgattgattggatggagaaaggcacgtttaagctatattatctgattgaacttatagaaaatg |
100 |
Q |
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| T |
38584155 |
aaaaagcttttaccggtcgatgcggagtctcggagactgattgattggatggagaaaggcacgtttaagctatattatctgattgaacttatagaaaatg |
38584056 |
T |
|
| Q |
101 |
agttttaattgcttgttttgatttgacttattgtatttcttttccaggtgtttacgatgccttgcagaagaagtacctgaagactcttctattctgtgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38584055 |
agttttaattgcttgttttgatttgacttattgtatttcttttccaggtgtttacgatgccttgcagaagaagtacctgaagactcttctattctgtgtg |
38583956 |
T |
|
| Q |
201 |
tgtgaagcagtggatggaccgatgattgaggaatatgcatgtaaggatttggcataggttatttgaatgtgatggaattgggaaattgtatttaaatgaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38583955 |
tgtgaagcagtggatggaccgatgattgaggaatatgcatgtaaggatttggcataggttatttgaatgtgatggaattgggaaattgtatttgaatgaa |
38583856 |
T |
|
| Q |
301 |
taccgaacataggttattgctttaggaagactgctatatgtggtagttgcaaaatgtagattccagtataatttaatttgagacacttatgaaagattca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38583855 |
taccgaacataggttattgctttaggaagactgctatatatggtagttgcaaaatgtagattccagtataatttaatttgagacacttatggaagattca |
38583756 |
T |
|
| Q |
401 |
taaacatagctacttttctcttgcagtttcctttagctactcagattccgagaagcaagaggtttcaatgaacatcaaccgcactggaagcaaaaagcag |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38583755 |
taaacatagctacttttctcttgcagtttcctttagctattcagattccgagaagcaagaggtttcaatgaacatcaaccgcactggaagcaaaaagcag |
38583656 |
T |
|
| Q |
501 |
gggggagccttcaagtgtaactca |
524 |
Q |
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|||||||||||||||||||||||| |
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| T |
38583655 |
gggggagccttcaagtgtaactca |
38583632 |
T |
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