View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18070_low_5 (Length: 418)

Name: NF18070_low_5
Description: NF18070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18070_low_5
NF18070_low_5
[»] chr1 (8 HSPs)
chr1 (94-403)||(32251059-32251368)
chr1 (94-245)||(32246137-32246285)
chr1 (2-95)||(32251424-32251517)
chr1 (3-95)||(32246341-32246433)
chr1 (274-325)||(32245445-32245496)
chr1 (250-281)||(32256441-32256472)
chr1 (247-281)||(32246032-32246066)
chr1 (369-405)||(32245317-32245353)
[»] chr8 (2 HSPs)
chr8 (3-57)||(10191252-10191306)
chr8 (2-46)||(13265093-13265137)


Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 94 - 403
Target Start/End: Complemental strand, 32251368 - 32251059
Alignment:
Q  94 aagcatataactgattgctcaaaagacttcttgaacacactttatatgtaagtttatagaagttgtgtaacttggactttcgaataaccctagacgttga 193  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32251368 aagcatataactgattgctcaaaagacttcttgaacacacttgatatgtaagtttatagaagttgtgtaacttggactttcgaataaccctagacgttga 32251269  T
Q  194 tttttgaaaatctttttcgaaatagtagtcttcgaacttttggcttgttctcaattttgaaacgagaggctacccctgcaatgagattaatcctgataca 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32251268 tttttgaaaatctttttcgaaatagtagtcttcgaacttttggcttattctcaattttgaaacgagaggctacccctgctatgagattaatcctgataca 32251169  T
Q  294 gttgcaaatagattaaaacaacaggagaagcagcaaactctacgcgtagaagctctgcaagattattagtaccaacagaaaagacacaaaaatgttgaca 393  Q
    |||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  32251168 gttgcaaatagattaatacaacaggagaagcagcaaacactacacgtagaagctctgctagattattagtaccaacagaaaagacacaaaaatgtagaca 32251069  T
Q  394 tggaaatttt 403  Q
    ||||||||||    
T  32251068 tggaaatttt 32251059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 94 - 245
Target Start/End: Complemental strand, 32246285 - 32246137
Alignment:
Q  94 aagcatataactgattgctcaaaagacttcttgaacacactttatatgtaagtttatagaagttgtgtaacttggactttcgaataaccctagacgttga 193  Q
    |||||||||||||||||||||||||||||| |||||| | || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32246285 aagcatataactgattgctcaaaagacttcctgaacatagttgatatgaaagtttatagaagttgtgtaacttggactttcgaataaccctagacgttga 32246186  T
Q  194 tttttgaaaatctttttcgaaatagtagtcttcgaacttttggcttgttctc 245  Q
    ||||||||||||   |||||||||| ||||||||||||| ||||||||||||    
T  32246185 tttttgaaaatc---ttcgaaatagcagtcttcgaacttctggcttgttctc 32246137  T

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Target: chr1; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 32251517 - 32251424
Alignment:
Q  2 gaaatgaactcatttacatagagtttgattatacaatttatagactaagaaataaattaatctccaacacatgtcgatgtcatgtgtcttctaa 95  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32251517 gaaatgaactcatttacatggagtttgattatacaatttatagactaagaaataaattaatctctaacacatgtcgatgtcatgtgtcttctaa 32251424  T

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Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 32246433 - 32246341
Alignment:
Q  3 aaatgaactcatttacatagagtttgattatacaatttatagactaagaaataaattaatctccaacacatgtcgatgtcatgtgtcttctaa 95  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||  ||||  ||| ||||||| |||||||||||    
T  32246433 aaatgaactcatttacatggagtttgattatacaatttatggactaagaaataaattaatctgtaacatgtgtggatgtcacgtgtcttctaa 32246341  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 274 - 325
Target Start/End: Complemental strand, 32245496 - 32245445
Alignment:
Q  274 atgagattaatcctgatacagttgcaaatagattaaaacaacaggagaagca 325  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  32245496 atgagtttagtcctgatacagttgcaaatagattaaaacaacaggagaagca 32245445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 281
Target Start/End: Complemental strand, 32256472 - 32256441
Alignment:
Q  250 ttgaaacgagaggctacccctgcaatgagatt 281  Q
    ||||||||||||||||||||||||||||||||    
T  32256472 ttgaaacgagaggctacccctgcaatgagatt 32256441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 281
Target Start/End: Complemental strand, 32246066 - 32246032
Alignment:
Q  247 attttgaaacgagaggctacccctgcaatgagatt 281  Q
    ||||| |||||||||||||||||||||||||||||    
T  32246066 attttcaaacgagaggctacccctgcaatgagatt 32246032  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Complemental strand, 32245353 - 32245317
Alignment:
Q  369 cagaaaagacacaaaaatgttgacatggaaatttttg 405  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  32245353 cagaaaggacacaaaaatgtagacatggaaatttttg 32245317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 10191252 - 10191306
Alignment:
Q  3 aaatgaactcatttacatagagtttgattatacaatttatagactaagaaataaa 57  Q
    |||||||||| ||| ||| |||||||||| || |||||||||||||| |||||||    
T  10191252 aaatgaactcttttgcatcgagtttgattttataatttatagactaacaaataaa 10191306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 13265137 - 13265093
Alignment:
Q  2 gaaatgaactcatttacatagagtttgattatacaatttatagac 46  Q
    ||||| ||||||||| |||||||||||||| || |||||||||||    
T  13265137 gaaataaactcatttgcatagagtttgattttataatttatagac 13265093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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