View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_high_102 (Length: 218)
Name: NF18071_high_102
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_high_102 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 4712823 - 4712625
Alignment:
| Q |
1 |
gatttcattcatgaattcatttagaccttgtcgagaacccaatttacgacgttttatcgcaacaggtatgagtccatcaatgtaacctttgtacacgttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4712823 |
gatttcattcatgaattcatttagaccttgtcgagaacccaatttacgacgttttatcgcaacaggtatgagtccatcaatgtaacctttgtacacgttg |
4712724 |
T |
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| Q |
101 |
ccgaatcctccaaccccgatgataaaaatatcttcgaagttgtttgtagcggctcttatttccactatagtaaaacatcgacacaaatgggatggtaaa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4712723 |
ccgaatcctccaaccccgatgataaaaatatcttcgaagttgtttgtagcggctcttatttccactatagtaaaacatcgacacaaatgggatggtaaa |
4712625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 4846778 - 4846580
Alignment:
| Q |
1 |
gatttcattcatgaattcatttagaccttgtcgagaacccaatttacgacgttttatcgcaacaggtatgagtccatcaatgtaacctttgtacacgttg |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
4846778 |
gatttcattcatgaattcatttagaccttatcgagaacccggtttacgacgttttatcgcaacaggtgtgagtccattgatgtaacctttgtacacgttg |
4846679 |
T |
|
| Q |
101 |
ccgaatcctccaaccccgatgataaaaatatcttcgaagttgtttgtagcggctcttatttccactatagtaaaacatcgacacaaatgggatggtaaa |
199 |
Q |
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| T |
4846678 |
ccgaaccctccagctccaatgataaaaatatcttcgaagttgtttgtagcttctcttatctccgctattgtaaaatagcggcacaaatgggacggtaaa |
4846580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 25 - 199
Target Start/End: Complemental strand, 4784568 - 4784394
Alignment:
| Q |
25 |
accttgtcgagaacccaatttacgacgttttatcgcaacaggtatgagtccatcaatgtaacctttgtacacgttgccgaatcctccaaccccgatgata |
124 |
Q |
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||||||| ||||||| |||| |||||||||||||||| ||| | | ||||||||| |||||||||||||| |||||||| |||||||||||||||||| |
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| T |
4784568 |
accttgttgagaacctggtttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattgccgaaccctccaaccccgatgata |
4784469 |
T |
|
| Q |
125 |
aaaatatcttcgaagttgtttgtagcggctcttatttccactatagtaaaacatcgacacaaatgggatggtaaa |
199 |
Q |
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|||||||||||||||||||||||||| ||| |||||||| |||| |||||| | || |||||||||||||||||| |
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| T |
4784468 |
aaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaa |
4784394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 25 - 199
Target Start/End: Complemental strand, 4816997 - 4816823
Alignment:
| Q |
25 |
accttgtcgagaacccaatttacgacgttttatcgcaacaggtatgagtccatcaatgtaacctttgtacacgttgccgaatcctccaaccccgatgata |
124 |
Q |
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||||||| ||||||| |||| |||||||||||||||| ||| | | ||||||||| |||||||||||||| |||||||| |||||||||||||||||| |
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| T |
4816997 |
accttgttgagaaccaggtttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattgccgaaccctccaaccccgatgata |
4816898 |
T |
|
| Q |
125 |
aaaatatcttcgaagttgtttgtagcggctcttatttccactatagtaaaacatcgacacaaatgggatggtaaa |
199 |
Q |
| |
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|||||||||||||||||||||||||| ||| |||||||| |||| |||||| | || |||||||||||||||||| |
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| T |
4816897 |
aaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaa |
4816823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 199
Target Start/End: Original strand, 4863252 - 4863446
Alignment:
| Q |
5 |
tcattcatgaattcatttagaccttgtcgagaacccaatttacgacgttttatcgcaacaggtatgagtccatcaatgtaacctttgtacacgttgccga |
104 |
Q |
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||||||||||| ||||||| ||||||| ||||||| |||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
4863252 |
tcattcatgaactcatttataccttgttgagaacctggtttaagacgttttatcgcaacaggtatgtctccatcaatataacctttgtacacgttgccga |
4863351 |
T |
|
| Q |
105 |
atcctccaaccccgatgataaaaatatcttcgaagttgtttgtagcggctcttatttccactatagtaaaacatcgacacaaatgggatggtaaa |
199 |
Q |
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| |||||||| || ||||| |||||||| || |||||||||||||| |||||||| || ||| |||||| | || |||||||||||||||||| |
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| T |
4863352 |
accctccaactccaatgatgaaaatatcgtcaaagttgtttgtagcagctcttatctctgttattgtaaaatagcggcacaaatgggatggtaaa |
4863446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 4697947 - 4697749
Alignment:
| Q |
1 |
gatttcattcatgaattcatttagaccttgtcgagaacccaatttacgacgttttatcgcaacaggtatgagtccatcaatgtaacctttgtacacgttg |
100 |
Q |
| |
|
||||||||||||||| || |||| ||||||| |||||||| ||| ||||||||| || |||||| | | |||| |||||||||||| ||||||| |
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| T |
4697947 |
gatttcattcatgaactcgtttacaccttgttgagaacccggtttcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgtta |
4697848 |
T |
|
| Q |
101 |
ccgaatcctccaaccccgatgataaaaatatcttcgaagttgtttgtagcggctcttatttccactatagtaaaacatcgacacaaatgggatggtaaa |
199 |
Q |
| |
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|| || |||||||| || ||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||| | || |||||||||||||||||| |
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| T |
4697847 |
ccaaaccctccaactccaatgataaaaatatcttcgaagttgtttgtagcggctcttatctccgctattgtaaaatagcggcacaaatgggatggtaaa |
4697749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 4652928 - 4653025
Alignment:
| Q |
50 |
cgttttatcgcaacaggtatgagtccatcaatgtaacctttgtacacgttgccgaatcctccaaccccgatgataaaaatatcttcgaagttgtttgt |
147 |
Q |
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|
||||||||||||||||| ||| |||||| ||| ||||||||||||||||||| ||||||||||| |||||||| |||| ||| |||||||| ||||| |
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| T |
4652928 |
cgttttatcgcaacaggcatggatccatcgatgcaacctttgtacacgttgccaaatcctccaacaccgatgatgaaaacatcatcgaagttatttgt |
4653025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 4643146 - 4643212
Alignment:
| Q |
84 |
aacctttgtacacgttgccgaatcctccaaccccgatgataaaaatatcttcgaagttgtttgtagc |
150 |
Q |
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|
||||||||||||||||||| || |||||||| |||||||||||| ||| ||||||||||||||||| |
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| T |
4643146 |
aacctttgtacacgttgccaaaccctccaactccgatgataaaagcatcatcgaagttgtttgtagc |
4643212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 4666377 - 4666449
Alignment:
| Q |
84 |
aacctttgtacacgttgccgaatcctccaaccccgatgataaaaatatcttcgaagttgtttgtagcggctct |
156 |
Q |
| |
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||||||||||||||||||| || |||||||| |||||||| ||| ||| || ||||||||||| || ||||| |
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| T |
4666377 |
aacctttgtacacgttgccaaaccctccaactccgatgatgaaatcatcgtcaaagttgtttgtggctgctct |
4666449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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