View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_high_15 (Length: 479)
Name: NF18071_high_15
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 24 - 462
Target Start/End: Original strand, 45887219 - 45887654
Alignment:
| Q |
24 |
ttcctaccattgcagcaccatcaccatcaggaaaaggtttaccttccgatgacacccccgccgcaacaaccaccaccactcctaccatgcaaagtgcatc |
123 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45887219 |
ttcctaccattgcagcaccatcaccatcaggaaaaggtttaccttccgatgacacccccgccgcaacaaccaccaccactcctaccatgcaaagtgcatc |
45887318 |
T |
|
| Q |
124 |
ttcagctacttgtatctcaccaattgttgccttcttttttattgtttcatggatcttgatcaattaaatattggtgtgagataattttctaagatatat- |
222 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45887319 |
ttcagctacttgtatctcaccaattgttgccttcttttttattgtttcatggatcttgatcaattaaatattggtgtgagattattttctaagatatata |
45887418 |
T |
|
| Q |
223 |
---------agaggccgtacttctatgnnnnnnnattcctgttccgtatcattatgaatttgaatttttgtttgatctattcaaactcattcttgtagta |
313 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45887419 |
tagccagacagaggccgtacttctatctttttttattcctgttccgtatcattatgaatttgaatttttgtttgatctattcaaactcattcttgtggta |
45887518 |
T |
|
| Q |
314 |
ttaattactaatctagtattgttttttctgtttttattattgtgcttaaatattgaatgattactggttactgatttttc-tttttattacttctttggt |
412 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
45887519 |
ttaattactaatctagtattgttttttc--------------tgcttaaatattgaatgattactggttactgatttttctttttttttacttctttggt |
45887604 |
T |
|
| Q |
413 |
tcaatctacgtgggatcttcttattttgagatctgggtaaagtcctaatt |
462 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
45887605 |
tcaatctatgtgggatcttcttattttgagatcagggtaaagtcctaatt |
45887654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 24 - 462
Target Start/End: Original strand, 45703413 - 45703850
Alignment:
| Q |
24 |
ttcctaccattgcagcaccatcaccatcaggaaaaggtttaccttccgatgacacccccgccgcaacaaccaccaccactcctaccatgcaaagtgcatc |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45703413 |
ttcctaccattgcagcaccatcaccatcaggaaaaggtttaccttccgatgacacccccgccgcaacaaccaccaccactcctaccatgcaaagtgcatc |
45703512 |
T |
|
| Q |
124 |
ttcagctacttgtatctcaccaattgttgccttcttttttattgtttcatggatcttgatcaattaaatattggtgtgagataattttctaagatatat- |
222 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45703513 |
ttcagctacttgtatctcaccaattgttgccttcttttttattgtttcatggatcttgatcaattaaatattggtgtgagattattttctaagatatata |
45703612 |
T |
|
| Q |
223 |
---------agaggccgtacttctatgnnnnnnnattcctgttccgt--atcattatgaatttgaatttttgtttgatctattcaaactcattcttgtag |
311 |
Q |
| |
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||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
45703613 |
tagccagacagaggccgtacttctatctttttttattcctgttccgtacatcattatgaatttgaatttttgtttgatctattcaaactcattcttgtgg |
45703712 |
T |
|
| Q |
312 |
tattaattactaatctagtattgttttttctgtttttattattgtgcttaaatattgaatgattactggttact-gatttttctttttattacttctttg |
410 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
45703713 |
tattaattactaatctagtattgttttttc--------------tgcttaaatattgaatgattactggttactggatttttcttttttttacttctttg |
45703798 |
T |
|
| Q |
411 |
gttcaatctacgtgggatcttcttattttgagatctgggtaaagtcctaatt |
462 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
45703799 |
gttcaatctatgtgggatcttcttattttgagatcagggtaaagtcctaatt |
45703850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 34 - 221
Target Start/End: Complemental strand, 45650276 - 45650089
Alignment:
| Q |
34 |
tgcagcaccatcaccatcaggaaaaggtttaccttccgatgacacccccgccgcaacaaccaccaccactcctaccatgcaaagtgcatcttcagctact |
133 |
Q |
| |
|
|||| ||||||| |||||||| ||||||| |||||| |||| |||||| || ||||| |||||||| |||||| ||| ||||||||||||||| ||||| |
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| T |
45650276 |
tgcaacaccatcgccatcagggaaaggttcaccttctgatggcacccctgctgcaaccaccaccactactccttccacacaaagtgcatcttcatctact |
45650177 |
T |
|
| Q |
134 |
tgtatctcaccaattgttgccttcttttttattgtttcatggatcttgatcaattaaatattggtgtgagataattttctaagatata |
221 |
Q |
| |
|
||||||||||||||||||| || ||||| | |||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||| |
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| T |
45650176 |
agtatctcaccaattgttgctttatttttcactgtttcatggatcttgatcagttatatactggtgtgagataattttccgagatata |
45650089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 34 - 202
Target Start/End: Complemental strand, 45643021 - 45642850
Alignment:
| Q |
34 |
tgcagcaccatcaccatcaggaaaaggtttaccttccgatgacacccccgccgcaacaaccaccaccact---cctaccatgcaaagtgcatcttcagct |
130 |
Q |
| |
|
|||| |||||| ||||||||| ||||||| |||||||||| |||||| ||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
45643021 |
tgcaacaccattaccatcagggaaaggttcaccttccgatcgcacccctgccgcaacaaccaccaccactactcctaccatacaaagtgcatcttcagct |
45642922 |
T |
|
| Q |
131 |
acttgtatctcaccaattgttgccttcttttttattgtttcatggatcttgatcaattaaatattggtgtga |
202 |
Q |
| |
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||| |||||||||| |||||| |||||||| | |||||| |||||||||||| || | ||||| |||||| |
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| T |
45642921 |
actaccatctcaccaactgttgctttctttttcactgtttcctggatcttgatccatcatatattagtgtga |
45642850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 336 - 461
Target Start/End: Complemental strand, 45642706 - 45642574
Alignment:
| Q |
336 |
tttttctgtttttattatt-gtgcttaa-atattgaatgattactggttactga-----tttttctttttattacttctttggttcaatctacgtgggat |
428 |
Q |
| |
|
||||||||||||| || || |||||||| ||| |||||||| | |||||||||| ||||| ||||| ||||||||||||||||||||| || |||| |
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| T |
45642706 |
tttttctgttttttttttttgtgcttaatatactgaatgatcattggttactgagtcttttttttttttttttacttctttggttcaatctatgtaggat |
45642607 |
T |
|
| Q |
429 |
cttcttattttgagatctgggtaaagtcctaat |
461 |
Q |
| |
|
||||||||||||||||| |||||||||| |||| |
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| T |
45642606 |
cttcttattttgagatcagggtaaagtcataat |
45642574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 45703340 - 45703407
Alignment:
| Q |
38 |
gcaccatcaccatcaggaaaaggtttaccttc---cgatgacacccccgccgcaacaaccaccaccac |
102 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||| |
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|
| T |
45703340 |
gcaccatcaccatcaggaaaaggttcaccttcttccgatgacacccccgccgcaacaacaaccaccac |
45703407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 45887146 - 45887213
Alignment:
| Q |
38 |
gcaccatcaccatcaggaaaaggtttaccttc---cgatgacacccccgccgcaacaaccaccaccac |
102 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||| |
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|
| T |
45887146 |
gcaccatcaccatcaggaaaaggttcaccttcttccgatgacacccccgccgcaacaacaaccaccac |
45887213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 185
Target Start/End: Original strand, 1193588 - 1193690
Alignment:
| Q |
86 |
gcaacaaccaccaccactcctaccatgcaaagtgcatcttcagctacttgtatctcaccaattgttg---ccttcttttttattgtttcatggatcttga |
182 |
Q |
| |
|
||||| |||||||| |||||||| | |||||||||||||||||||||| | ||| ||||||||||| | || ||||| ||||||||||||||||||| |
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|
| T |
1193588 |
gcaactaccaccactactcctactacgcaaagtgcatcttcagctactaggctctaaccaattgttgcttctttatttttcattgtttcatggatcttga |
1193687 |
T |
|
| Q |
183 |
tca |
185 |
Q |
| |
|
||| |
|
|
| T |
1193688 |
tca |
1193690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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