View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18071_high_16 (Length: 478)

Name: NF18071_high_16
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18071_high_16
NF18071_high_16
[»] chr7 (19 HSPs)
chr7 (60-469)||(11738145-11738557)
chr7 (38-344)||(11744779-11745087)
chr7 (371-460)||(15680836-15680925)
chr7 (373-460)||(20549820-20549907)
chr7 (371-460)||(32287406-32287495)
chr7 (371-465)||(33994239-33994333)
chr7 (371-460)||(21880179-21880268)
chr7 (398-467)||(5409767-5409836)
chr7 (391-460)||(26033393-26033462)
chr7 (381-460)||(598245-598324)
chr7 (369-460)||(22484050-22484141)
chr7 (398-460)||(2334314-2334376)
chr7 (371-417)||(5835274-5835320)
chr7 (391-448)||(6028683-6028740)
chr7 (371-440)||(8234173-8234242)
chr7 (391-460)||(24339700-24339769)
chr7 (400-460)||(17852056-17852116)
chr7 (371-403)||(22602710-22602742)
chr7 (429-465)||(24289869-24289905)
[»] chr8 (19 HSPs)
chr8 (371-465)||(40332218-40332312)
chr8 (371-460)||(3025578-3025667)
chr8 (371-465)||(18407746-18407840)
chr8 (371-451)||(4298841-4298918)
chr8 (371-460)||(14134726-14134815)
chr8 (376-460)||(926731-926815)
chr8 (371-419)||(4786322-4786370)
chr8 (379-455)||(5813627-5813703)
chr8 (381-455)||(126295-126369)
chr8 (392-466)||(29510230-29510304)
chr8 (374-460)||(36450697-36450783)
chr8 (391-460)||(21465470-21465539)
chr8 (398-455)||(22197679-22197736)
chr8 (391-460)||(22652034-22652103)
chr8 (374-455)||(31109466-31109547)
chr8 (371-403)||(8847283-8847315)
chr8 (371-403)||(11927086-11927118)
chr8 (372-452)||(15023208-15023288)
chr8 (371-403)||(26902175-26902207)
[»] chr1 (32 HSPs)
chr1 (374-460)||(37598861-37598947)
chr1 (371-460)||(1815284-1815373)
chr1 (371-460)||(18337356-18337445)
chr1 (371-460)||(22515830-22515919)
chr1 (371-455)||(5898214-5898298)
chr1 (372-460)||(46348326-46348414)
chr1 (371-466)||(51410052-51410147)
chr1 (371-440)||(7353455-7353525)
chr1 (371-449)||(40181898-40181976)
chr1 (374-460)||(42359392-42359478)
chr1 (371-460)||(1486647-1486741)
chr1 (371-448)||(38078616-38078693)
chr1 (371-452)||(40258884-40258965)
chr1 (421-464)||(21038163-21038206)
chr1 (371-441)||(28674827-28674897)
chr1 (371-405)||(30749867-30749901)
chr1 (371-405)||(30771318-30771352)
chr1 (391-465)||(40917807-40917881)
chr1 (391-460)||(6427522-6427591)
chr1 (391-460)||(31694642-31694711)
chr1 (372-405)||(52903277-52903310)
chr1 (428-460)||(2218312-2218344)
chr1 (372-460)||(5927283-5927371)
chr1 (371-403)||(5944310-5944342)
chr1 (428-460)||(16812640-16812672)
chr1 (421-465)||(21365990-21366034)
chr1 (369-405)||(24334703-24334739)
chr1 (371-455)||(26830615-26830698)
chr1 (392-460)||(32461396-32461464)
chr1 (371-403)||(34371740-34371772)
chr1 (372-440)||(39130730-39130798)
chr1 (371-403)||(44482257-44482289)
[»] chr3 (18 HSPs)
chr3 (371-460)||(55401102-55401191)
chr3 (371-465)||(40993273-40993367)
chr3 (371-460)||(18426976-18427065)
chr3 (371-448)||(10954979-10955056)
chr3 (371-460)||(35222965-35223054)
chr3 (371-460)||(20503492-20503581)
chr3 (371-452)||(28918028-28918111)
chr3 (378-460)||(13845468-13845550)
chr3 (391-465)||(41961577-41961651)
chr3 (371-460)||(8842356-8842445)
chr3 (371-455)||(3631711-3631795)
chr3 (390-454)||(4987229-4987293)
chr3 (372-450)||(7171529-7171607)
chr3 (371-405)||(7928477-7928511)
chr3 (371-440)||(34307738-34307812)
chr3 (372-405)||(8383285-8383318)
chr3 (374-455)||(25093532-25093613)
chr3 (428-460)||(11610593-11610625)
[»] scaffold0053 (1 HSPs)
scaffold0053 (379-460)||(8833-8914)
[»] chr6 (20 HSPs)
chr6 (371-460)||(17841532-17841621)
chr6 (371-465)||(28715322-28715416)
chr6 (371-460)||(28152125-28152214)
chr6 (371-460)||(34595161-34595250)
chr6 (391-465)||(10339052-10339126)
chr6 (370-440)||(29020938-29021008)
chr6 (391-466)||(8365445-8365520)
chr6 (371-465)||(4877970-4878063)
chr6 (371-461)||(32978841-32978931)
chr6 (371-460)||(7378006-7378095)
chr6 (371-405)||(7265591-7265625)
chr6 (371-460)||(6898224-6898313)
chr6 (409-466)||(8776905-8776962)
chr6 (393-454)||(17435259-17435320)
chr6 (371-440)||(19040379-19040448)
chr6 (372-405)||(21924933-21924966)
chr6 (428-460)||(426481-426513)
chr6 (371-403)||(7027269-7027301)
chr6 (371-403)||(9025494-9025526)
chr6 (376-452)||(23771610-23771686)
[»] chr5 (13 HSPs)
chr5 (371-460)||(21576688-21576777)
chr5 (371-460)||(21190999-21191088)
chr5 (371-465)||(43564908-43565002)
chr5 (373-440)||(30502351-30502418)
chr5 (373-440)||(30542694-30542761)
chr5 (370-455)||(30098986-30099071)
chr5 (392-461)||(39268540-39268609)
chr5 (391-460)||(39698599-39698668)
chr5 (371-405)||(28588672-28588706)
chr5 (398-460)||(31084382-31084444)
chr5 (391-460)||(32766875-32766944)
chr5 (371-452)||(42893387-42893468)
chr5 (371-455)||(42029779-42029863)
[»] chr4 (21 HSPs)
chr4 (371-460)||(23292929-23293018)
chr4 (370-465)||(16073420-16073515)
chr4 (379-460)||(34306747-34306828)
chr4 (371-452)||(49431053-49431134)
chr4 (371-451)||(21945530-21945610)
chr4 (371-460)||(2361918-2362007)
chr4 (391-460)||(19312393-19312462)
chr4 (371-452)||(28964199-28964280)
chr4 (371-455)||(8423666-8423750)
chr4 (409-460)||(14465008-14465059)
chr4 (371-417)||(54580009-54580055)
chr4 (408-461)||(28084588-28084641)
chr4 (371-440)||(40179599-40179668)
chr4 (428-467)||(18513171-18513210)
chr4 (424-466)||(3064865-3064907)
chr4 (428-465)||(11596295-11596332)
chr4 (371-460)||(12895217-12895306)
chr4 (371-460)||(35157928-35158017)
chr4 (428-460)||(2054127-2054159)
chr4 (371-451)||(4157463-4157543)
chr4 (374-454)||(20950376-20950456)
[»] chr2 (28 HSPs)
chr2 (371-460)||(2438662-2438751)
chr2 (371-460)||(28596496-28596585)
chr2 (391-460)||(35056926-35056995)
chr2 (371-460)||(37559004-37559093)
chr2 (393-460)||(26769571-26769638)
chr2 (393-451)||(27084318-27084376)
chr2 (371-460)||(18840956-18841045)
chr2 (391-460)||(30717462-30717531)
chr2 (371-450)||(12224250-12224329)
chr2 (391-466)||(37419801-37419876)
chr2 (421-460)||(44635570-44635609)
chr2 (371-405)||(5367219-5367253)
chr2 (374-460)||(15972903-15972989)
chr2 (371-405)||(20242725-20242759)
chr2 (371-449)||(37411198-37411276)
chr2 (371-456)||(5040761-5040846)
chr2 (371-440)||(29176456-29176525)
chr2 (372-405)||(34691803-34691836)
chr2 (372-405)||(34714215-34714248)
chr2 (371-460)||(34993925-34994014)
chr2 (371-460)||(38117102-38117191)
chr2 (370-403)||(44860346-44860379)
chr2 (428-460)||(11223796-11223828)
chr2 (371-403)||(12668423-12668455)
chr2 (371-403)||(18622633-18622665)
chr2 (428-460)||(34691772-34691804)
chr2 (428-460)||(34714184-34714216)
chr2 (371-403)||(36756344-36756376)
[»] scaffold0652 (1 HSPs)
scaffold0652 (374-460)||(405-491)
[»] scaffold0475 (1 HSPs)
scaffold0475 (374-460)||(3338-3424)
[»] scaffold0050 (1 HSPs)
scaffold0050 (371-460)||(70305-70394)
[»] scaffold0512 (1 HSPs)
scaffold0512 (381-460)||(4979-5058)
[»] scaffold0008 (1 HSPs)
scaffold0008 (391-460)||(263304-263373)
[»] scaffold0361 (1 HSPs)
scaffold0361 (371-460)||(14557-14643)
[»] scaffold0083 (1 HSPs)
scaffold0083 (371-417)||(45516-45562)
[»] scaffold0003 (1 HSPs)
scaffold0003 (391-460)||(241652-241721)
[»] scaffold0171 (1 HSPs)
scaffold0171 (371-403)||(23447-23479)
[»] scaffold0086 (1 HSPs)
scaffold0086 (391-455)||(2986-3050)


Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 60 - 469
Target Start/End: Complemental strand, 11738557 - 11738145
Alignment:
Q  60 taaatgctaatgagtaatttgacatgattgtgcaataggaagtggtggatcagaaaaggaaccatcaagtattctatttgcaatccattgatttgctgct 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11738557 taaatgctaatgagtaatttgacatgattgtgcaataggaagtggtggatctgaaaaagaaccatcaagtattctatttgcaatccattgatttgctgct 11738458  T
Q  160 tcagtgtagtgcactccatcccaactaatgtactttgaaggatcttcacaagaactagcaactatttctttaccattaatcgttgctttatttccacaat 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| |||||||    
T  11738457 tcagtgtagtgcactccatcccaactaatgtactttgaaggatcttcacaagaacttgtaacaatttctttaccattaatcgttgctttattcccacaat 11738358  T
Q  260 aaacatggtatccatcttcatgatacccacaacatattccagatgggtccacaaatcctacaattcaattcaacaattcataattaaggggttaataa-- 357  Q
    ||||||||||||||| ||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||| |||||||||||||||      
T  11738357 aaacatggtatccattttcatgatacccacaacatattccagaaggatcaacaaatcctacaattcaattcaacaattcatagttaaggggttaataata 11738258  T
Q  358 -nnnnnnnngtgtgcataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgt 456  Q
              | ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  11738257 tatttttttttttgcataattcagtgtaattatacgtgtcgctgtcggaaatgagacgtgttccacactgagacacgcctaatcagaggagtgtccgtgt 11738158  T
Q  457 ttcacaggttctg 469  Q
    |||| ||||||||    
T  11738157 ttcataggttctg 11738145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 38 - 344
Target Start/End: Complemental strand, 11745087 - 11744779
Alignment:
Q  38 aatagaattagaataggtag--tgtaaatgctaatgagtaatttgacatgattgtgcaataggaagtggtggatcagaaaaggaaccatcaagtattcta 135  Q
    |||||||||| |||||| ||  ||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||| ||||||||||    
T  11745087 aatagaattaaaataggcaggatgtaaatgctaatgagtaatttgacatgagtgtgcaataggaagtgatggatctgaaaaggaaccattaagtattcta 11744988  T
Q  136 tttgcaatccattgatttgctgcttcagtgtagtgcactccatcccaactaatgtactttgaaggatcttcacaagaactagcaactatttctttaccat 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11744987 tttgcaatccattgatttgctgcttcagtgtagtgcactccatcccaactaatgtactttgaaggatcttcacaagaactagcaactatttctttaccat 11744888  T
Q  236 taatcgttgctttatttccacaataaacatggtatccatcttcatgatacccacaacatattccagatgggtccacaaatcctacaattcaattcaacaa 335  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||    
T  11744887 taatcattgctttatttccacaataaacatggtatccatcttcatgatacccacaacatattccagaagggttaacaaatcctacaattcaattcaacaa 11744788  T
Q  336 ttcataatt 344  Q
    |||||||||    
T  11744787 ttcataatt 11744779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 371 - 460
Target Start/End: Original strand, 15680836 - 15680925
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||| |||||||||||| |||||||||||||| | ||||||||| | |||| |||||||| |||||  |||||||||||||| ||||    
T  15680836 cataatttagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgtctaattcgaggagtgtccgtgcttca 15680925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 373 - 460
Target Start/End: Original strand, 20549820 - 20549907
Alignment:
Q  373 taattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||||||||||||| |||||||||||||| |  |||| ||| | ||| |||||||||||||||| |||||||| ||||| ||||    
T  20549820 taattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccgacaatgagacacgcctaatccgaggagtgcccgtgcttca 20549907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 460
Target Start/End: Complemental strand, 32287495 - 32287406
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||||||| || |||| |||||||||||||| |||||| |||| | |||| | ||||| ||||||| |||||||||||||| ||||    
T  32287495 cataattcagtgcaagtatatgtgtcggtgtcggacatgacaagtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttca 32287406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 371 - 465
Target Start/End: Original strand, 33994239 - 33994333
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 465  Q
    |||||||||||| ||||| | ||||||||||| || | ||||| ||| | |||| |||||||||||||||  |||||||| ||||||||| ||||    
T  33994239 cataattcagtgcaattacaagtgtcggtgtcagacacgacacatgtccaacaccgagacacgcctaatccaaggagtgttcgtgtttcataggt 33994333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 460
Target Start/End: Original strand, 21880179 - 21880268
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||||||||||||| | |||||||||||||| | ||||| ||| | ||||   ||||||||||||| ||| |||||||||| ||||    
T  21880179 cataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttca 21880268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 467
Target Start/End: Complemental strand, 5409836 - 5409767
Alignment:
Q  398 gtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggttc 467  Q
    |||||||| | ||||||||| | |||| | ||||||||||||| |||||||||||||| |||| ||||||    
T  5409836 gtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcataggttc 5409767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 460
Target Start/End: Complemental strand, 26033462 - 26033393
Alignment:
Q  391 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||||||| || ||||||||||| | | || | ||||| ||||||| |||||||||||||||||||    
T  26033462 cgtgtcggtgtcagacatgacacgtgtccgataccgcgacacacctaatccgaggagtgtccgtgtttca 26033393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 460
Target Start/End: Original strand, 598245 - 598324
Alignment:
Q  381 tgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||| || ||||||||||| || | ||||||||| | |||| | ||||||||||||| ||| |||||||||| ||||    
T  598245 tgtaattgtaagtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttca 598324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 460
Target Start/End: Original strand, 22484050 - 22484141
Alignment:
Q  369 tgcataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||||||||| |||||||| ||||||||||| || ||||||| ||| | |||  |||||| | || ||| ||| |||||||||| ||||    
T  22484050 tgcataattcagtataattatatgtgtcggtgtcagacatgacacatgtccgacatcgagacatgtctgatccgagaagtgtccgtgcttca 22484141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 460
Target Start/End: Original strand, 2334314 - 2334376
Alignment:
Q  398 gtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||| | ||||| ||| | ||||||| ||||| |||||| |||||||||||||||||||    
T  2334314 gtgtcggacacgacacatgtccgacactgaaacacgtctaatccgaggagtgtccgtgtttca 2334376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 417
Target Start/End: Original strand, 5835274 - 5835320
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgt 417  Q
    |||||||||||||||||||| ||||||||||| || |||||| ||||    
T  5835274 cataattcagtgtaattatatgtgtcggtgtcagacatgacatgtgt 5835320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 448
Target Start/End: Original strand, 6028683 - 6028740
Alignment:
Q  391 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagt 448  Q
    |||||| |||||| | | |||||| |||| ||||||||||||||||||||||| ||||    
T  6028683 cgtgtcagtgtcgaacacgacacgagttcgacactgagacacgcctaatctgaagagt 6028740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 440
Target Start/End: Original strand, 8234173 - 8234242
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatc 440  Q
    |||||||||||||| ||| | ||| |||||||||| | ||||| ||| | |||| |||||||||||||||    
T  8234173 cataattcagtgtagttacaagtgccggtgtcggacacgacacatgtccgacaccgagacacgcctaatc 8234242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 460
Target Start/End: Original strand, 24339700 - 24339769
Alignment:
Q  391 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||||||||||| | ||||||| | | |||| | ||||||||||||| |||||||| ||||| ||||    
T  24339700 cgtgtcggtgtcggacacgacacgtatccgacaccgggacacgcctaatccgaggagtgcccgtgcttca 24339769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 460
Target Start/End: Original strand, 17852056 - 17852116
Alignment:
Q  400 gtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||| ||||||||||| | |||| ||||||| ||||||  |||||||||||||| ||||    
T  17852056 gtcggacatgacacgtgtccgacaccgagacacacctaattcgaggagtgtccgtgcttca 17852116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 22602742 - 22602710
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcg 403  Q
    |||||||||||||||||||| ||||||||||||    
T  22602742 cataattcagtgtaattatatgtgtcggtgtcg 22602710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 465
Target Start/End: Original strand, 24289869 - 24289905
Alignment:
Q  429 acacgcctaatctgaggagtgtccgtgtttcacaggt 465  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  24289869 acactcctaatctgaggagtgtccgtgtttcataggt 24289905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 371 - 465
Target Start/End: Original strand, 40332218 - 40332312
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 465  Q
    |||||||||||||||||| | |||||||||| ||| | ||||||||| |||||| | ||| ||||||||| ||||||||||||||||||||||||    
T  40332218 cataattcagtgtaattacaagtgtcggtgtgggacacgacacgtgtcccacaccgggacgcgcctaatccgaggagtgtccgtgtttcacaggt 40332312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 371 - 460
Target Start/End: Original strand, 3025578 - 3025667
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||||||||||||||| ||||| |||||||| | |||||||||   |||||| |||||| |||||| |||||||||||||| ||||    
T  3025578 cataattcagtgtaattataggtgtcagtgtcggacacgacacgtgtctgacactgtgacacggctaatccgaggagtgtccgtgcttca 3025667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 465
Target Start/End: Original strand, 18407746 - 18407840
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 465  Q
    |||||||||||||||||| | |||||| || |||| | ||||| ||| | |||||  ||||||||||||  |||||||||||||| |||| ||||    
T  18407746 cataattcagtgtaattacaagtgtcgctgccggacacgacacatgtccgacactaggacacgcctaattggaggagtgtccgtgcttcataggt 18407840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 451
Target Start/End: Complemental strand, 4298918 - 4298841
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtc 451  Q
    ||||||| | |||||||| | ||||||||||| ||  |||||||||||| |||| | ||||||||||||||||||||||||    
T  4298918 cataatttaatgtaattacaagtgtcggtgtcaga--tgacacgtgttcgacacgg-gacacgcctaatctgaggagtgtc 4298841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 460
Target Start/End: Original strand, 14134726 - 14134815
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||||||||||||||||  ||||||||||  | | ||||||||| |  |||   ||||||||||||  |||||||||||||||||||    
T  14134726 cataattcagtgtaattatatatgtcggtgtcaaacacgacacgtgtccgtcaccaggacacgcctaattcgaggagtgtccgtgtttca 14134815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 460
Target Start/End: Complemental strand, 926815 - 926731
Alignment:
Q  376 ttcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||||||||||| ||||||||||||||   ||||||||| | |||| | |||| || | ||| |||||||||||||| ||||    
T  926815 ttcagtgtaattataagtgtcggtgtcggacgcgacacgtgtccgacaccgggacatgctttatccgaggagtgtccgtgcttca 926731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 419
Target Start/End: Complemental strand, 4786370 - 4786322
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttc 419  Q
    |||||||||||||||||||| |||||||||||||| | |||| ||||||    
T  4786370 cataattcagtgtaattatatgtgtcggtgtcggatacgacatgtgttc 4786322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 455
Target Start/End: Original strand, 5813627 - 5813703
Alignment:
Q  379 agtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 455  Q
    ||||||| || | |||||||||||||| | ||||||||| | |||| | ||||||||||||  ||||||||||||||    
T  5813627 agtgtaaatacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcctaattggaggagtgtccgtg 5813703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 455
Target Start/End: Complemental strand, 126369 - 126295
Alignment:
Q  381 tgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 455  Q
    |||||||||| ||||| |||||||| | ||||||||| | | || | |||||| |||||| ||||||||||||||    
T  126369 tgtaattatatgtgtcagtgtcggacacgacacgtgtccaataccgggacacggctaatccgaggagtgtccgtg 126295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 466
Target Start/End: Complemental strand, 29510304 - 29510230
Alignment:
Q  392 gtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggtt 466  Q
    |||||||||||||| | ||| ||||| | |||| | ||||| ||||||| |||||||||||||| |||| |||||    
T  29510304 gtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcataggtt 29510230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 460
Target Start/End: Complemental strand, 36450783 - 36450697
Alignment:
Q  374 aattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||||||||||| | |||| ||||||||| | ||| ||||| | ||||   ||||||||||||| |||||||||| ||| ||||    
T  36450783 aattcagtgtaattacaagtgtaggtgtcggacacgacgcgtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttca 36450697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 460
Target Start/End: Original strand, 21465470 - 21465539
Alignment:
Q  391 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||| |||||||| | ||||||||| | |||| | || ||||||||| ||||||||||||||| ||||    
T  21465470 cgtgtcagtgtcggacacgacacgtgtccaacacagggatacgcctaatttgaggagtgtccgtgcttca 21465539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 455
Target Start/End: Complemental strand, 22197736 - 22197679
Alignment:
Q  398 gtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 455  Q
    |||||||| ||||||||||| | |||| |   ||||||||||||||||||||||||||    
T  22197736 gtgtcggacatgacacgtgtccgacaccggatcacgcctaatctgaggagtgtccgtg 22197679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 460
Target Start/End: Original strand, 22652034 - 22652103
Alignment:
Q  391 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||||||||||| | |||| |||| | |||| | |||||| |||||| |||||||||||||| ||||    
T  22652034 cgtgtcggtgtcggacacgacatgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttca 22652103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 455
Target Start/End: Complemental strand, 31109547 - 31109466
Alignment:
Q  374 aattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 455  Q
    |||||||| ||| |||| ||||| |||||||| |||   |||||   |||||| ||||||||||||| ||||||||||||||    
T  31109547 aattcagtctaactatatgtgtcagtgtcggacatgtgtcgtgtatgacactgggacacgcctaatccgaggagtgtccgtg 31109466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 8847283 - 8847315
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcg 403  Q
    |||||||||||||||||||| ||||||||||||    
T  8847283 cataattcagtgtaattatatgtgtcggtgtcg 8847315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 11927118 - 11927086
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcg 403  Q
    |||||||||||||||||||| ||||||||||||    
T  11927118 cataattcagtgtaattatatgtgtcggtgtcg 11927086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 452
Target Start/End: Complemental strand, 15023288 - 15023208
Alignment:
Q  372 ataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtcc 452  Q
    ||||||||||||||||| | |||||| ||||||| | ||||||||| | |  |||  ||||| |||||| |||||||||||    
T  15023288 ataattcagtgtaattacaagtgtcgatgtcggatacgacacgtgtccgatgctggaacacgtctaatccgaggagtgtcc 15023208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 26902207 - 26902175
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcg 403  Q
    |||||||||||||||||||| ||||||||||||    
T  26902207 cataattcagtgtaattatatgtgtcggtgtcg 26902175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 374 - 460
Target Start/End: Original strand, 37598861 - 37598947
Alignment:
Q  374 aattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||||||||||||| |||||||||||||| | ||||||||| | ||| || ||||||||||||| |||||||||||||| ||||    
T  37598861 aattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaatgggacacgcctaatccgaggagtgtccgtgcttca 37598947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 460
Target Start/End: Original strand, 1815284 - 1815373
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||||||||||||| | ||||||||||| || | ||||| ||| | |||| | |||||||||||||||||||||| ||||| ||||    
T  1815284 cataattcagtgtaattacaagtgtcggtgtccgacacgacacatgtccgacaccgggacacgcctaatctgaggagtgaccgtgattca 1815373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 460
Target Start/End: Original strand, 18337356 - 18337445
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||||||||||||| | |||||||||||||| |  |||||||| | |||||| |||| |||| ||| |||||||||||||| ||||    
T  18337356 cataattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccgacactgggacatgcctgatccgaggagtgtccgtgcttca 18337445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 460
Target Start/End: Complemental strand, 22515919 - 22515830
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||| |||||||||| | |||||||||||||| | ||||| | | | |||| ||||||||||||||| |||||||||||||| ||||    
T  22515919 cataatttagtgtaattacaagtgtcggtgtcggacacgacacatatccgacaccgagacacgcctaatccgaggagtgtccgtgcttca 22515830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 371 - 455
Target Start/End: Complemental strand, 5898298 - 5898214
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 455  Q
    |||||||||||||||||||| | ||||||||| || | ||||||||| | |||| | |||||| |||||| ||||||||||||||    
T  5898298 cataattcagtgtaattatatgcgtcggtgtcagacacgacacgtgtccaacaccgggacacgtctaatccgaggagtgtccgtg 5898214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 372 - 460
Target Start/End: Complemental strand, 46348414 - 46348326
Alignment:
Q  372 ataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||| |||||||||| | |||||||||||||| | ||||||||| | |||| ||||||||||| ||| |||| ||||||||| ||||    
T  46348414 ataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctgatccgaggtgtgtccgtgcttca 46348326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 466
Target Start/End: Original strand, 51410052 - 51410147
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggtt 466  Q
    |||||||||||||||||| | |||||||||||||| | ||||||| | | |||| |||||||||||||||  |||||| | |||| |||| |||||    
T  51410052 cataattcagtgtaattacaagtgtcggtgtcggacacgacacgtatccgacaccgagacacgcctaatccaaggagtattcgtgcttcataggtt 51410147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 371 - 440
Target Start/End: Complemental strand, 7353525 - 7353455
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttcc-acactgagacacgcctaatc 440  Q
    ||||||| ||||||||||||  ||||||||||| | ||||||||| |||| ||||||||||||||||||||    
T  7353525 cataatttagtgtaattatatatgtcggtgtcgaacatgacacgttttccgacactgagacacgcctaatc 7353455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 371 - 449
Target Start/End: Original strand, 40181898 - 40181976
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtg 449  Q
    |||||||||||||||||||| || ||||||||||| |  |||||||| | |||| | ||||||||||||| ||||||||    
T  40181898 cataattcagtgtaattatatgtatcggtgtcggacacaacacgtgtcctacaccgggacacgcctaatccgaggagtg 40181976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 374 - 460
Target Start/End: Complemental strand, 42359478 - 42359392
Alignment:
Q  374 aattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||||||||||| | |||||||||||||| | |||  |||| | |||| | ||||||||||||| |||||||||||||| ||||    
T  42359478 aattcagtgtaattacaagtgtcggtgtcggacaagacgtgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttca 42359392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 460
Target Start/End: Complemental strand, 1486741 - 1486647
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcg-----gaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||||||||||||||| ||||||||||||     || | ||||||||| | |||| | ||||||||||||| |||||||||| ||| ||||    
T  1486741 cataattcagtgtaattataagtgtcggtgtcgtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtctgtgcttca 1486647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 448
Target Start/End: Complemental strand, 38078693 - 38078616
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagt 448  Q
    ||||||||| |||||||| | |||||||||||||| | ||||| ||||| ||||   ||||||||||||| |||||||    
T  38078693 cataattcaatgtaattacaagtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgaggagt 38078616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 452
Target Start/End: Complemental strand, 40258965 - 40258884
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtcc 452  Q
    |||||||||||||||||| | ||||||||||| || | ||||| ||| | ||||   ||||||||||||| |||||||||||    
T  40258965 cataattcagtgtaattacaagtgtcggtgtcagacacgacacctgtccgacaccaggacacgcctaatccgaggagtgtcc 40258884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 464
Target Start/End: Original strand, 21038163 - 21038206
Alignment:
Q  421 acactgagacacgcctaatctgaggagtgtccgtgtttcacagg 464  Q
    ||||||||||||||||||||||| ||||||| ||| ||||||||    
T  21038163 acactgagacacgcctaatctgatgagtgtctgtgcttcacagg 21038206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 441
Target Start/End: Original strand, 28674827 - 28674897
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatct 441  Q
    ||||||||||| ||||||||  ||| |||||| || | ||||| ||| | |||||||||||||||||||||    
T  28674827 cataattcagtataattatatatgttggtgtcagacacgacacttgtccaacactgagacacgcctaatct 28674897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 405
Target Start/End: Original strand, 30749867 - 30749901
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcgga 405  Q
    |||||||||||||||||||| ||||||||||||||    
T  30749867 cataattcagtgtaattatatgtgtcggtgtcgga 30749901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 405
Target Start/End: Original strand, 30771318 - 30771352
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcgga 405  Q
    |||||||||||||||||||| ||||||||||||||    
T  30771318 cataattcagtgtaattatatgtgtcggtgtcgga 30771352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 465
Target Start/End: Original strand, 40917807 - 40917881
Alignment:
Q  391 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 465  Q
    ||||||||||| ||| | ||||||||| | |||| | ||||||||||||| ||||| |||||||| |||| ||||    
T  40917807 cgtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgaggactgtccgtgcttcataggt 40917881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 460
Target Start/End: Original strand, 6427522 - 6427591
Alignment:
Q  391 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||| || |||||| | ||||||||| | |||| | |||||||||||||||| ||||||||||| ||||    
T  6427522 cgtgtaggcgtcggacacgacacgtgtccgacaccgggacacgcctaatctgatgagtgtccgtgcttca 6427591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 460
Target Start/End: Complemental strand, 31694711 - 31694642
Alignment:
Q  391 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||||||||||| |  |||| | ||| |||| |  ||||||||||||||||||||||||||| ||||    
T  31694711 cgtgtcggtgtcggacacaacacatattcgacaccggaacacgcctaatctgaggagtgtccgtgcttca 31694642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 405
Target Start/End: Original strand, 52903277 - 52903310
Alignment:
Q  372 ataattcagtgtaattatacgtgtcggtgtcgga 405  Q
    ||||||||||||||||||| ||||||||||||||    
T  52903277 ataattcagtgtaattatatgtgtcggtgtcgga 52903310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 460
Target Start/End: Original strand, 2218312 - 2218344
Alignment:
Q  428 gacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||||||||||||||||||||||| ||||    
T  2218312 gacacgcctaatctgaggagtgtccgtgcttca 2218344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 460
Target Start/End: Complemental strand, 5927371 - 5927283
Alignment:
Q  372 ataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||| | |||||||| | ||||| |||||||| ||||||  ||| | |||  || ||| ||||||||||||||||||||||| ||||    
T  5927371 ataatttaatgtaattacaagtgtcagtgtcggacatgacaaatgtccgacatcgaaacatgcctaatctgaggagtgtccgtgcttca 5927283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 5944310 - 5944342
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcg 403  Q
    |||||||||||||||||||| ||||||||||||    
T  5944310 cataattcagtgtaattataagtgtcggtgtcg 5944342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 460
Target Start/End: Original strand, 16812640 - 16812672
Alignment:
Q  428 gacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||||||||||||||||||||||| ||||    
T  16812640 gacacgcctaatctgaggagtgtccgtgcttca 16812672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 465
Target Start/End: Complemental strand, 21366034 - 21365990
Alignment:
Q  421 acactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 465  Q
    |||| ||||||||||||||| |||||||||||||| |||| ||||    
T  21366034 acaccgagacacgcctaatccgaggagtgtccgtgcttcataggt 21365990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 405
Target Start/End: Complemental strand, 24334739 - 24334703
Alignment:
Q  369 tgcataattcagtgtaattatacgtgtcggtgtcgga 405  Q
    |||||||||||||||||||| | ||||||||||||||    
T  24334739 tgcataattcagtgtaattacaagtgtcggtgtcgga 24334703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 455
Target Start/End: Original strand, 26830615 - 26830698
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 455  Q
    ||||||| | |||||||||| |||||| |||| || |  |||||||||| | || | ||||||||||||| ||||||||||||||    
T  26830615 cataattaaatgtaattataagtgtcg-tgtcagacactacacgtgttcgataccgggacacgcctaatcagaggagtgtccgtg 26830698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 460
Target Start/End: Complemental strand, 32461464 - 32461396
Alignment:
Q  392 gtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||||||||| | |||||||||   |||||| |||||||||||||  || |||||||||| ||||    
T  32461464 gtgtcggtgtcggacacgacacgtgtctgacactgggacacgcctaatccaagaagtgtccgtgcttca 32461396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 34371740 - 34371772
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcg 403  Q
    |||||||||||||||||||| ||||||||||||    
T  34371740 cataattcagtgtaattatatgtgtcggtgtcg 34371772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 39130798 - 39130730
Alignment:
Q  372 ataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatc 440  Q
    |||||| |||||||||||| |||||||||||||| |  ||||||| || ||| || ||||||| |||||    
T  39130798 ataatttagtgtaattatatgtgtcggtgtcggacacaacacgtgctcgacattgggacacgcttaatc 39130730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 44482257 - 44482289
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcg 403  Q
    |||||||||||||||||||| ||||||||||||    
T  44482257 cataattcagtgtaattatatgtgtcggtgtcg 44482289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 371 - 460
Target Start/End: Original strand, 55401102 - 55401191
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||| |||||||||| | |||||||||||||| | ||||||||| | |||| ||||||||||||||| |||||||||||||| ||||    
T  55401102 cataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttca 55401191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 465
Target Start/End: Complemental strand, 40993367 - 40993273
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 465  Q
    |||||||||||||||||||| |||||||||||||| | ||||| ||| | |||| | ||||||||||||| ||||||||||| || |||| ||||    
T  40993367 cataattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccatgcttcataggt 40993273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 371 - 460
Target Start/End: Original strand, 18426976 - 18427065
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||| |||||||||||  ||||||||||||| | ||||||||| |  ||| | ||||| |||||||||||||||||||||||||||    
T  18426976 cataattcggtgtaattatatatgtcggtgtcggatacgacacgtgtccggcaccgggacacacctaatctgaggagtgtccgtgtttca 18427065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 448
Target Start/End: Original strand, 10954979 - 10955056
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagt 448  Q
    |||||||||||||||| | | |||||||||||||| | ||||||||| | |||||| ||||||||||||| |||||||    
T  10954979 cataattcagtgtaatcacaagtgtcggtgtcggacacgacacgtgtccgacactgggacacgcctaatccgaggagt 10955056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 460
Target Start/End: Original strand, 35222965 - 35223054
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||||   |||| | ||||||| | ||| |||||||||||||| ||||    
T  35222965 cataattcaatgtaattatatgtgtcggtgtcggacatgacacgtgtctgacacggggacacgctttatccgaggagtgtccgtgcttca 35223054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 460
Target Start/End: Original strand, 20503492 - 20503581
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||||||||||||| | |||||||||| ||| | ||||| |||   |||| | ||||||||||||| |||||||||||||| ||||    
T  20503492 cataattcagtgtaattacaagtgtcggtgttggacacgacacatgtctgacaccgggacacgcctaatccgaggagtgtccgtgcttca 20503581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 452
Target Start/End: Original strand, 28918028 - 28918111
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtc--ggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtcc 452  Q
    |||||||||||||||||| | |||||||||||  ||| | ||||||||| | |||||| |||||||||||||  ||||||||||    
T  28918028 cataattcagtgtaattacaagtgtcggtgtcgtggacacgacacgtgtccgacactgggacacgcctaatccaaggagtgtcc 28918111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 460
Target Start/End: Complemental strand, 13845550 - 13845468
Alignment:
Q  378 cagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||||||||| |||||||||||||| | || ||||||   |||| ||||||||||| |||  ||||||||||||| ||||    
T  13845550 cagtgtaattatatgtgtcggtgtcggacacgagacgtgtctgacacggagacacgccttatccaaggagtgtccgtgcttca 13845468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 465
Target Start/End: Complemental strand, 41961651 - 41961577
Alignment:
Q  391 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 465  Q
    ||||||||| ||||| | ||||||||| | |||||| ||||||||||||| ||| |||||||||| |||| ||||    
T  41961651 cgtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcataggt 41961577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 460
Target Start/End: Original strand, 8842356 - 8842445
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||  |||||||||||  |||||||||| || | ||||| ||||  | | |||||||||||||||| |||||||||||||| ||||    
T  8842356 cataatttggtgtaattatatatgtcggtgtcagacacgacacatgttagatattgagacacgcctaatccgaggagtgtccgtgcttca 8842445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 455
Target Start/End: Original strand, 3631711 - 3631795
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 455  Q
    |||||||||||||||||||| ||| | |||||||| | ||||| ||| | ||||   |||||||||| || ||||||||||||||    
T  3631711 cataattcagtgtaattatatgtgccagtgtcggacacgacacatgtccgacaccaggacacgcctagtccgaggagtgtccgtg 3631795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 454
Target Start/End: Complemental strand, 4987293 - 4987229
Alignment:
Q  390 acgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgt 454  Q
    |||||||||||| ||| | ||||||||| | |||| | ||||||||||||| |||||||||||||    
T  4987293 acgtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgt 4987229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 450
Target Start/End: Original strand, 7171529 - 7171607
Alignment:
Q  372 ataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgt 450  Q
    ||||||| ||||||||| | |||| ||||||||| | ||||||||| | |||| | |||||||||||||  ||||||||    
T  7171529 ataattcggtgtaattacaagtgttggtgtcggacacgacacgtgtccgacaccgcgacacgcctaatccaaggagtgt 7171607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 405
Target Start/End: Original strand, 7928477 - 7928511
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcgga 405  Q
    |||||||||||||||||||| ||||||||||||||    
T  7928477 cataattcagtgtaattatatgtgtcggtgtcgga 7928511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 440
Target Start/End: Complemental strand, 34307812 - 34307738
Alignment:
Q  371 cataattcagtgtaattata-----cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatc 440  Q
    |||| |||||||||||||||     ||||||||||||||| | ||||||| ||| | ||||||||||||||||||    
T  34307812 catatttcagtgtaattataagtgtcgtgtcggtgtcggacacgacacgtcttcgatactgagacacgcctaatc 34307738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 405
Target Start/End: Original strand, 8383285 - 8383318
Alignment:
Q  372 ataattcagtgtaattatacgtgtcggtgtcgga 405  Q
    ||||||||||||||||||| ||||||||||||||    
T  8383285 ataattcagtgtaattataagtgtcggtgtcgga 8383318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 455
Target Start/End: Original strand, 25093532 - 25093613
Alignment:
Q  374 aattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 455  Q
    ||||||||||||||||| |||||||||||||| |  |||| ||| | |||||||  |||  ||||||||| |||||| ||||    
T  25093532 aattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccgacactgaagcacttctaatctgaagagtgttcgtg 25093613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 460
Target Start/End: Original strand, 11610593 - 11610625
Alignment:
Q  428 gacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||||||||||||||||||||||| ||||    
T  11610593 gacacgcctaatctgaggagtgtccgtgcttca 11610625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 379 - 460
Target Start/End: Original strand, 8833 - 8914
Alignment:
Q  379 agtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||||| | |||||||||||||| | ||||||||| | |||| ||||||||||||||||||||||| |||||| ||||    
T  8833 agtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatctgaggagtctccgtgcttca 8914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 371 - 460
Target Start/End: Complemental strand, 17841621 - 17841532
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||| |||||||||| | ||| |||||||||| | |||| |||| | |||||||||||||||||||| |||||||||||||| ||||    
T  17841621 cataatttagtgtaattacaagtgacggtgtcggacacgacatgtgtccgacactgagacacgcctaatccgaggagtgtccgtgcttca 17841532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 371 - 465
Target Start/End: Original strand, 28715322 - 28715416
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 465  Q
    |||||||||||||||||| | |||||||||||||| | ||||||||||| |||| | ||||||||||||  ||| ||||| |||| |||| ||||    
T  28715322 cataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgttcgacaccgggacacgcctaattcgagaagtgtacgtgcttcataggt 28715416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 460
Target Start/End: Original strand, 28152125 - 28152214
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||||||||||||| | |||||||||||||| | ||||||||| | |||| | |||| |||||||| ||||||||| |||| ||||    
T  28152125 cataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacaggcctaatccgaggagtgttcgtgcttca 28152214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 460
Target Start/End: Original strand, 34595161 - 34595250
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||||||||||||| | |||||||||||||| | |||||||||   |||| | ||||| ||||||| |||||||||||||| ||||    
T  34595161 cataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtctgacaccgggacacacctaatccgaggagtgtccgtgcttca 34595250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 465
Target Start/End: Complemental strand, 10339126 - 10339052
Alignment:
Q  391 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 465  Q
    ||||||||||||||| | ||||| ||| | |||||| ||||||||||||| |||||||||||||| |||| ||||    
T  10339126 cgtgtcggtgtcggacacgacacatgtccgacactgggacacgcctaatcggaggagtgtccgtgcttcataggt 10339052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 370 - 440
Target Start/End: Original strand, 29020938 - 29021008
Alignment:
Q  370 gcataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatc 440  Q
    ||||||||||||||||||||| ||||  |||||||| | ||||||||||| |||| ||| |||||||||||    
T  29020938 gcataattcagtgtaattataggtgtttgtgtcggacacgacacgtgttcgacaccgaggcacgcctaatc 29021008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 391 - 466
Target Start/End: Complemental strand, 8365520 - 8365445
Alignment:
Q  391 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggtt 466  Q
    ||||||||| ||||| | ||||||||| | |||||| ||||||||||||| ||||||| |||||| |||| |||||    
T  8365520 cgtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtctccgtgcttcataggtt 8365445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 465
Target Start/End: Original strand, 4877970 - 4878063
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 465  Q
    ||||||| ||| |||||| | |||||||||||||| | ||||| ||| | |||| | ||||||||||||| |||||||||||||| |||| ||||    
T  4877970 cataattaagtataattacaagtgtcggtgtcggacacgacacatgtccgacacag-gacacgcctaatccgaggagtgtccgtgcttcataggt 4878063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 461
Target Start/End: Complemental strand, 32978931 - 32978841
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcac 461  Q
    ||||||| |||||||||| | |||||||||||||| | ||||| ||| | |||| | |||||| ||||||  ||||||||||||| |||||    
T  32978931 cataattaagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgtctaatccaaggagtgtccgtgcttcac 32978841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 460
Target Start/End: Original strand, 7378006 - 7378095
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||||| |||||||||| |||||||||||||| | |||| |  | | |||| | |||||| |||||||||| |||||||||| ||||    
T  7378006 cataattcaatgtaattatatgtgtcggtgtcggacacgacatgcatccgacaccgggacacggctaatctgagaagtgtccgtgcttca 7378095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 405
Target Start/End: Complemental strand, 7265625 - 7265591
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcgga 405  Q
    |||||||||||||||||||| ||||||||||||||    
T  7265625 cataattcagtgtaattatatgtgtcggtgtcgga 7265591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 460
Target Start/End: Complemental strand, 6898313 - 6898224
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||| |||||||||| | |||||||||||||| | ||  ||||| | |||| || |||||||||||| || |||||| |||| ||||    
T  6898313 cataattaagtgtaattacaagtgtcggtgtcggacacgaagcgtgtccaacaccgaaacacgcctaatccgatgagtgttcgtgcttca 6898224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 466
Target Start/End: Complemental strand, 8776962 - 8776905
Alignment:
Q  409 gacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggtt 466  Q
    ||||||||| | |||| ||||||| ||||||| |||||||||||||| |||| |||||    
T  8776962 gacacgtgtccgacaccgagacacacctaatccgaggagtgtccgtgcttcataggtt 8776905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 454
Target Start/End: Original strand, 17435259 - 17435320
Alignment:
Q  393 tgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgt 454  Q
    ||||| ||||||| | ||||||||||| |||||| |||||| |||||||||  |||||||||    
T  17435259 tgtcgatgtcggacacgacacgtgttcgacactgggacacgtctaatctgaaaagtgtccgt 17435320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 440
Target Start/End: Original strand, 19040379 - 19040448
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatc 440  Q
    |||||||||||||||||||| ||||| |||||||| | ||||| ||||| ||  || ||||| |||||||    
T  19040379 cataattcagtgtaattatatgtgtctgtgtcggacacgacacatgttcaactttgggacacacctaatc 19040448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 405
Target Start/End: Complemental strand, 21924966 - 21924933
Alignment:
Q  372 ataattcagtgtaattatacgtgtcggtgtcgga 405  Q
    ||||||||||||||||||| ||||||||||||||    
T  21924966 ataattcagtgtaattatatgtgtcggtgtcgga 21924933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 460
Target Start/End: Complemental strand, 426513 - 426481
Alignment:
Q  428 gacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||||||||||||||||||||||| ||||    
T  426513 gacacgcctaatctgaggagtgtccgtgcttca 426481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 7027269 - 7027301
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcg 403  Q
    |||||||||||||||||||| ||||||||||||    
T  7027269 cataattcagtgtaattatatgtgtcggtgtcg 7027301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 9025526 - 9025494
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcg 403  Q
    |||||||||||||||||||| ||||||||||||    
T  9025526 cataattcagtgtaattatatgtgtcggtgtcg 9025494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 452
Target Start/End: Original strand, 23771610 - 23771686
Alignment:
Q  376 ttcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtcc 452  Q
    ||||||||||||| |  ||||||||||||| | |||| |||| | |||| |||||||| |||| |||| ||||||||    
T  23771610 ttcagtgtaattacaaatgtcggtgtcggacacgacatgtgtccgacacagagacacgtctaacctgaagagtgtcc 23771686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 371 - 460
Target Start/End: Complemental strand, 21576777 - 21576688
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||||||||||||| | |||||| ||||||| | |||||||||   |||||| ||||||||||||| |||||||||||||| ||||    
T  21576777 cataattcagtgtaattacaagtgtcgatgtcggacacgacacgtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttca 21576688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 460
Target Start/End: Complemental strand, 21191088 - 21190999
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||||||||||||| | |||||||||||||| |  |||||||| | || | | ||||||||||||| |||||||||||||| ||||    
T  21191088 cataattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccgactccgggacacgcctaatccgaggagtgtccgtgcttca 21190999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 371 - 465
Target Start/End: Original strand, 43564908 - 43565002
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 465  Q
    ||||||| |||||||||||| |||||||||||||| | |||| |||| | || | | ||||||||||||| ||| |||||||||| |||| ||||    
T  43564908 cataatttagtgtaattataagtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctaatccgagaagtgtccgtgcttcataggt 43565002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 30502418 - 30502351
Alignment:
Q  373 taattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatc 440  Q
    |||||||||||||||||| |||||||||||||| | ||||| ||| | |||||| |||| ||||||||    
T  30502418 taattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatc 30502351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 30542761 - 30542694
Alignment:
Q  373 taattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatc 440  Q
    |||||||||||||||||| |||||||||||||| | ||||| ||| | |||||| |||| ||||||||    
T  30542761 taattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatc 30542694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 455
Target Start/End: Complemental strand, 30099071 - 30098986
Alignment:
Q  370 gcataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 455  Q
    ||||||||| ||||||||||| |||||||||||||| | |||||||||   |||| | ||||||||| |||  |||||||| ||||    
T  30099071 gcataattctgtgtaattatatgtgtcggtgtcggatacgacacgtgtctgacacggggacacgccttatccaaggagtgttcgtg 30098986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 392 - 461
Target Start/End: Complemental strand, 39268609 - 39268540
Alignment:
Q  392 gtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcac 461  Q
    |||||||||| ||| | |||| |||| | |||||| ||||||||||||| |||||||||||||| |||||    
T  39268609 gtgtcggtgttggacacgacatgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcac 39268540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 460
Target Start/End: Original strand, 39698599 - 39698668
Alignment:
Q  391 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||||||||||| | |||| || | | |||| ||||||||||||||| |||||||||||||| ||||    
T  39698599 cgtgtcggtgtcggacacgacatgtatccgacaccgagacacgcctaatccgaggagtgtccgtgcttca 39698668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 405
Target Start/End: Complemental strand, 28588706 - 28588672
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcgga 405  Q
    |||||||||||||||||||| ||||||||||||||    
T  28588706 cataattcagtgtaattataggtgtcggtgtcgga 28588672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 460
Target Start/End: Original strand, 31084382 - 31084444
Alignment:
Q  398 gtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||| | ||||||||| | |||||| |||| |||||||| |||||||||||||| ||||    
T  31084382 gtgtcggacacgacacgtgtccgacactgggacatgcctaatccgaggagtgtccgtggttca 31084444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 460
Target Start/End: Complemental strand, 32766944 - 32766875
Alignment:
Q  391 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||||||||| ||| ||||||||| | ||||   || ||| ||||||||||||||||||||| ||||    
T  32766944 cgtgtcggtgtcgaaaacgacacgtgtccgacaccaggatacgtctaatctgaggagtgtccgtgcttca 32766875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 452
Target Start/End: Original strand, 42893387 - 42893468
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtcc 452  Q
    |||||| ||||||||||| | ||||||||||| || |  |||||||| | ||||   |||||||||||| ||||||||||||    
T  42893387 cataatccagtgtaattacaagtgtcggtgtcagacacaacacgtgtccgacaccaggacacgcctaatatgaggagtgtcc 42893468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 455
Target Start/End: Original strand, 42029779 - 42029863
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 455  Q
    ||||||||| |||||||||| || ||||||||||| | ||||| |||    |||  |||||||||| ||| ||||||||||||||    
T  42029779 cataattcaatgtaattatatgtatcggtgtcggacacgacacatgtctgtcacgtagacacgccttatccgaggagtgtccgtg 42029863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 371 - 460
Target Start/End: Complemental strand, 23293018 - 23292929
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||||||| |||||| | |||||||||||||| | ||||||||| | |||| | ||||||||||||| |||||||||||||| ||||    
T  23293018 cataattcagtataattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttca 23292929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 370 - 465
Target Start/End: Original strand, 16073420 - 16073515
Alignment:
Q  370 gcataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 465  Q
    ||||||||||||||||||| | |||||||||||||| | || || ||| | ||||| |||||||||||||| ||||||||||| || |||| ||||    
T  16073420 gcataattcagtgtaattacaagtgtcggtgtcggacacgatacatgtccgacactaagacacgcctaatccgaggagtgtccatgcttcataggt 16073515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 379 - 460
Target Start/End: Complemental strand, 34306828 - 34306747
Alignment:
Q  379 agtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||||| | |||||||||||||| | ||||||||| | |||| ||||||||||||||||||||| ||| |||| ||||    
T  34306828 agtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatctgaggaatgttcgtgcttca 34306747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 452
Target Start/End: Original strand, 49431053 - 49431134
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtcc 452  Q
    |||||||||||||||||| | |||||||||||||| | ||||||||| | |||| | ||||||||| ||| |||||||||||    
T  49431053 cataattcagtgtaattaaaagtgtcggtgtcggacacgacacgtgtccaacaccgggacacgccttatccgaggagtgtcc 49431134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 371 - 451
Target Start/End: Original strand, 21945530 - 21945610
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtc 451  Q
    |||||||||||||||||| | |||||||||||||| ||||||| ||| | |||| |  |||||||||||| ||||||||||    
T  21945530 cataattcagtgtaattacaagtgtcggtgtcggacatgacacatgtccgacaccgcaacacgcctaatccgaggagtgtc 21945610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 460
Target Start/End: Complemental strand, 2362007 - 2361918
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||| |||||||||| | |||||||||||||| | ||| |||||   |||| ||||||| |||||||||| ||||||||||| ||||    
T  2362007 cataatttagtgtaattaaaagtgtcggtgtcggacacgactcgtgtctgacaccgagacacacctaatctgacgagtgtccgtgcttca 2361918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 391 - 460
Target Start/End: Original strand, 19312393 - 19312462
Alignment:
Q  391 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||| ||||||| | ||||||||| | |||| |||||||| |||||||||| |||||||||||||||    
T  19312393 cgtgtcgttgtcggatacgacacgtgtccgacaccgagacacgtctaatctgagaagtgtccgtgtttca 19312462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 452
Target Start/End: Complemental strand, 28964280 - 28964199
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtcc 452  Q
    |||||||||||||||||| | ||||| |||||||| | ||||| | | | |||||| ||||||||||||| |||||||||||    
T  28964280 cataattcagtgtaattacaagtgtctgtgtcggacacgacacatatccgacactgggacacgcctaatccgaggagtgtcc 28964199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 455
Target Start/End: Complemental strand, 8423750 - 8423666
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 455  Q
    ||||||||||||||||||||  ||||||||||||| | ||||  ||| | |||| | ||||||||||||| ||| ||||||||||    
T  8423750 cataattcagtgtaattataaatgtcggtgtcggacacgacagctgtccgacaccgggacacgcctaatcggagaagtgtccgtg 8423666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 409 - 460
Target Start/End: Complemental strand, 14465059 - 14465008
Alignment:
Q  409 gacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||||||| |||||| |||||| ||||||||||||||||||||| ||||    
T  14465059 gacacgtgttcgacactgggacacgtctaatctgaggagtgtccgtgcttca 14465008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 54580055 - 54580009
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgt 417  Q
    |||||||||||||||||||| |||||||||||||| | |||||||||    
T  54580055 cataattcagtgtaattataagtgtcggtgtcggacacgacacgtgt 54580009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 461
Target Start/End: Original strand, 28084588 - 28084641
Alignment:
Q  408 tgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcac 461  Q
    |||||||||| | |||||| ||||||||||||| |||||||||||||| |||||    
T  28084588 tgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcac 28084641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 440
Target Start/End: Complemental strand, 40179668 - 40179599
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatc 440  Q
    |||||||||||||||||||| | |||||||||||| | ||||| ||||| ||||   |||||||||||||    
T  40179668 cataattcagtgtaattatatgcgtcggtgtcggacacgacacatgttcgacaccatgacacgcctaatc 40179599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 467
Target Start/End: Complemental strand, 18513210 - 18513171
Alignment:
Q  428 gacacgcctaatctgaggagtgtccgtgtttcacaggttc 467  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  18513210 gacacgcctaatctgaggagtgtccgtgcttcataggttc 18513171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 466
Target Start/End: Complemental strand, 3064907 - 3064865
Alignment:
Q  424 ctgagacacgcctaatctgaggagtgtccgtgtttcacaggtt 466  Q
    ||||||||||||||||| |||||||||||||| |||| |||||    
T  3064907 ctgagacacgcctaatccgaggagtgtccgtgcttcataggtt 3064865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 465
Target Start/End: Complemental strand, 11596332 - 11596295
Alignment:
Q  428 gacacgcctaatctgaggagtgtccgtgtttcacaggt 465  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  11596332 gacacgcctaatctgaggagtgtccgtgcttcataggt 11596295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 460
Target Start/End: Complemental strand, 12895306 - 12895217
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||  ||||||||||| |||||||||||||| | |||| || | | |||  | ||||||||||||| ||||||||| |||| ||||    
T  12895306 cataattttgtgtaattataagtgtcggtgtcggacacgacatgtatccgacatcgggacacgcctaatccgaggagtgttcgtgcttca 12895217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 460
Target Start/End: Complemental strand, 35158017 - 35157928
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||| |||||||||||| ||||||||||| || | ||||| ||| | |||| |  |||||| ||||| ||| |||||||||| ||||    
T  35158017 cataatttagtgtaattataagtgtcggtgtctgacacgacacatgtccaacaccggaacacgcttaatccgagaagtgtccgtgcttca 35157928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 460
Target Start/End: Original strand, 2054127 - 2054159
Alignment:
Q  428 gacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||||||||||| ||||||||||||||||    
T  2054127 gacacgcctaatctgaagagtgtccgtgtttca 2054159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 451
Target Start/End: Original strand, 4157463 - 4157543
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtc 451  Q
    ||||||| |||| ||||| | |||||||||||||| | ||||| ||| | |||| |||| |||||||||  ||||||||||    
T  4157463 cataatttagtgcaattacaagtgtcggtgtcggacacgacacatgtccgacaccgagaaacgcctaattcgaggagtgtc 4157543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 454
Target Start/End: Complemental strand, 20950456 - 20950376
Alignment:
Q  374 aattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgt 454  Q
    ||||||||||||||||| ||||||||||| || | || || ||||| |||| || |||||| |||||  ||||||| ||||    
T  20950456 aattcagtgtaattatatgtgtcggtgtcagacacgatacatgttcaacacagaaacacgcataatccaaggagtgcccgt 20950376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 371 - 460
Target Start/End: Complemental strand, 2438751 - 2438662
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||||||||||||| | |||||||||||||| | ||||| ||| | |||| | ||||||||||||| |||||||||||||| ||||    
T  2438751 cataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttca 2438662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 371 - 460
Target Start/End: Original strand, 28596496 - 28596585
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||| |||||||||||||| |||||||||||||| | ||||||||| | |||||  ||||| ||||||| |||||||||||||| ||||    
T  28596496 cataagtcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacactcggacactcctaatccgaggagtgtccgtgcttca 28596585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 391 - 460
Target Start/End: Original strand, 35056926 - 35056995
Alignment:
Q  391 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||||||||||| | ||||||||| | |||| || ||||||||||||||||||||||||||| ||||    
T  35056926 cgtgtcggtgtcggacacgacacgtgtccgacacggaaacacgcctaatctgaggagtgtccgtgcttca 35056995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 460
Target Start/End: Original strand, 37559004 - 37559093
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||||| |||||||| | ||||||||||||||  |||||||||| | |||| |  |||||| ||||| |||||||||||||| ||||    
T  37559004 cataattcaatgtaattacaagtgtcggtgtcggacttgacacgtgtccgacaccggtacacgcttaatccgaggagtgtccgtgcttca 37559093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 393 - 460
Target Start/End: Original strand, 26769571 - 26769638
Alignment:
Q  393 tgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||| ||||| | ||||||||| | |||||| ||||||||||||| |||||||||||||| ||||    
T  26769571 tgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttca 26769638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 451
Target Start/End: Original strand, 27084318 - 27084376
Alignment:
Q  393 tgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtc 451  Q
    ||||||||||||| | ||||||||| | |||| ||||||||||||||| ||||||||||    
T  27084318 tgtcggtgtcggacacgacacgtgtccaacaccgagacacgcctaatcggaggagtgtc 27084376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 460
Target Start/End: Complemental strand, 18841045 - 18840956
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||| |||||||||| | ||||||||||| || | ||||| ||| | |||| | ||||| ||||||| |||||||||||||| ||||    
T  18841045 cataattaagtgtaattacaagtgtcggtgtcagacacgacacatgtccgacaccgggacacacctaatccgaggagtgtccgtgcttca 18840956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 460
Target Start/End: Complemental strand, 30717531 - 30717462
Alignment:
Q  391 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||| ||||||| | ||||||||||| |||||| || ||||||||||  ||||||||||||| ||||    
T  30717531 cgtgtcgttgtcggacacgacacgtgttcgacactgggatacgcctaatccaaggagtgtccgtgcttca 30717462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 450
Target Start/End: Original strand, 12224250 - 12224329
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgt 450  Q
    |||||| || |||||||| | |||||||||||||| | || |||||| | |||||| |||||||||||||  ||||||||    
T  12224250 cataatccaatgtaattacaagtgtcggtgtcggacacgatacgtgtccgacactgggacacgcctaatccaaggagtgt 12224329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 466
Target Start/End: Original strand, 37419801 - 37419876
Alignment:
Q  391 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggtt 466  Q
    ||||||||||||||| | ||  ||||| | |||| | ||||||||||||| |||||||||||||| |||| |||||    
T  37419801 cgtgtcggtgtcggacacgatgcgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcataggtt 37419876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 460
Target Start/End: Original strand, 44635570 - 44635609
Alignment:
Q  421 acactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  44635570 acaccgagacacgcctaatctgaggagtgtccgtgcttca 44635609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 405
Target Start/End: Original strand, 5367219 - 5367253
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcgga 405  Q
    |||||||||||||||||||| ||||||||||||||    
T  5367219 cataattcagtgtaattatatgtgtcggtgtcgga 5367253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 460
Target Start/End: Original strand, 15972903 - 15972989
Alignment:
Q  374 aattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||||||||||| | |||||||||||||| | ||||||||| | || | | ||||| ||||||| || || |||||||| ||||    
T  15972903 aattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacgccgggacacacctaatccgaagaatgtccgtgcttca 15972989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 405
Target Start/End: Complemental strand, 20242759 - 20242725
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcgga 405  Q
    |||||||||||||||||||| ||||||||||||||    
T  20242759 cataattcagtgtaattatatgtgtcggtgtcgga 20242725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 449
Target Start/End: Complemental strand, 37411276 - 37411198
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtg 449  Q
    ||||||||||||| |||||| |||||| ||||| | | ||| ||||| | |||||| |||||||||| || ||||||||    
T  37411276 cataattcagtgtgattatatgtgtcgatgtcgaacacgacgcgtgtccgacactgggacacgcctagtccgaggagtg 37411198  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 456
Target Start/End: Original strand, 5040761 - 5040846
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgt 456  Q
    ||||||||| |||||||| | |||||||||||||| | |||| |||| | || | | |||||||||| ||  ||||||||||||||    
T  5040761 cataattcaatgtaattacaagtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctagtccaaggagtgtccgtgt 5040846  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 440
Target Start/End: Complemental strand, 29176525 - 29176456
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatc 440  Q
    |||||||||||||||||||| |||| ||||| ||| | | ||| ||| | |||||||||||| |||||||    
T  29176525 cataattcagtgtaattataagtgttggtgttggacacggcacatgtccgacactgagacacacctaatc 29176456  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 405
Target Start/End: Complemental strand, 34691836 - 34691803
Alignment:
Q  372 ataattcagtgtaattatacgtgtcggtgtcgga 405  Q
    ||||||||||||||||||| ||||||||||||||    
T  34691836 ataattcagtgtaattatatgtgtcggtgtcgga 34691803  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 405
Target Start/End: Complemental strand, 34714248 - 34714215
Alignment:
Q  372 ataattcagtgtaattatacgtgtcggtgtcgga 405  Q
    ||||||||||||||||||| ||||||||||||||    
T  34714248 ataattcagtgtaattatatgtgtcggtgtcgga 34714215  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 460
Target Start/End: Complemental strand, 34994014 - 34993925
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||||| |||||||||| ||||| |||||| | | |||| |||| | |||||| ||||||||||||   |||||||| |||| ||||    
T  34994014 cataattcaatgtaattatatgtgtcagtgtcgaacacgacatgtgtccgacactgggacacgcctaattcaaggagtgttcgtgcttca 34993925  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 460
Target Start/End: Complemental strand, 38117191 - 38117102
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||| ||| ||||||||| | |||| ||||||||| |  |||||||| | |||| | ||||||||||||| |||| ||||||||| ||||    
T  38117191 catacttcggtgtaattacaagtgttggtgtcggacacaacacgtgtccgacaccgggacacgcctaatccgaggggtgtccgtgcttca 38117102  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Original strand, 44860346 - 44860379
Alignment:
Q  370 gcataattcagtgtaattatacgtgtcggtgtcg 403  Q
    ||||||||||||||||||||| ||||||||||||    
T  44860346 gcataattcagtgtaattatatgtgtcggtgtcg 44860379  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 460
Target Start/End: Complemental strand, 11223828 - 11223796
Alignment:
Q  428 gacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||||||||||||||||||||||| ||||    
T  11223828 gacacgcctaatctgaggagtgtccgtgcttca 11223796  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 12668455 - 12668423
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcg 403  Q
    |||||||||||||||||||| ||||||||||||    
T  12668455 cataattcagtgtaattataagtgtcggtgtcg 12668423  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 18622633 - 18622665
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcg 403  Q
    ||||||||||||||||||||||||| |||||||    
T  18622633 cataattcagtgtaattatacgtgttggtgtcg 18622665  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 460
Target Start/End: Complemental strand, 34691804 - 34691772
Alignment:
Q  428 gacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||||||||| |||||||||||||||||||    
T  34691804 gacacgcctaatccgaggagtgtccgtgtttca 34691772  T

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Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 460
Target Start/End: Complemental strand, 34714216 - 34714184
Alignment:
Q  428 gacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||||||||| |||||||||||||||||||    
T  34714216 gacacgcctaatccgaggagtgtccgtgtttca 34714184  T

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Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 36756376 - 36756344
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcg 403  Q
    |||||||||||||||||||| ||||||||||||    
T  36756376 cataattcagtgtaattataagtgtcggtgtcg 36756344  T

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Target: scaffold0652 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 374 - 460
Target Start/End: Complemental strand, 491 - 405
Alignment:
Q  374 aattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||||||||||||| | |||||||||||||| | ||| ||||| | |||| | ||||| ||||||| |||||||||||||| ||||    
T  491 aattcagtgtaattacaagtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttca 405  T

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Target: scaffold0475 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 374 - 460
Target Start/End: Original strand, 3338 - 3424
Alignment:
Q  374 aattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||| |||||||||| | ||||| |||||||| | |||||||| |  |||||| ||||||||||||| |||||||||||||| ||||    
T  3338 aattaagtgtaattacaagtgtcagtgtcggacaagacacgtggtggacactgggacacgcctaatccgaggagtgtccgtgcttca 3424  T

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Target: scaffold0050 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 460
Target Start/End: Original strand, 70305 - 70394
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||||||||||||||| |||||||||||||| | ||||||||| | ||||   |||| |||||||| || |||||| |||| ||||    
T  70305 cataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccaggacatgcctaatccgatgagtgttcgtgcttca 70394  T

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Target: scaffold0512 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 381 - 460
Target Start/End: Complemental strand, 5058 - 4979
Alignment:
Q  381 tgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||| | |||||||||||||| | ||||||||| | ||| ||||||| |||||||| |||||||||| ||| ||||    
T  5058 tgtaattacaagtgtcggtgtcggacacgacacgtgtccgacattgagacatgcctaatccgaggagtgtctgtgcttca 4979  T

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Target: scaffold0008 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 460
Target Start/End: Complemental strand, 263373 - 263304
Alignment:
Q  391 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||||||| || | ||||||||||| | ||  |||||||||||||| |||||||||||||| ||||    
T  263373 cgtgtcggtgtcagacacgacacgtgttcgataccaagacacgcctaatccgaggagtgtccgtggttca 263304  T

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Target: scaffold0361 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 460
Target Start/End: Original strand, 14557 - 14643
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    |||||||||||||||||| | |||   |||||||| | ||||||||| | |||| |||||||||||||||  |||||||| |||| ||||    
T  14557 cataattcagtgtaattacaagtg---gtgtcggacacgacacgtgtccgacaccgagacacgcctaatcgaaggagtgtacgtgcttca 14643  T

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Target: scaffold0083 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 45562 - 45516
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgt 417  Q
    |||||||||||||||||| | |||||||||||||| | |||||||||    
T  45562 cataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgt 45516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 460
Target Start/End: Original strand, 241652 - 241721
Alignment:
Q  391 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 460  Q
    ||||| ||||||||| | ||||||||| | |||| | ||||||||||||| ||| |||||||||| ||||    
T  241652 cgtgttggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttca 241721  T

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Target: scaffold0171 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 23447 - 23479
Alignment:
Q  371 cataattcagtgtaattatacgtgtcggtgtcg 403  Q
    |||||||||||||||||||| ||||||||||||    
T  23447 cataattcagtgtaattataagtgtcggtgtcg 23479  T

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Target: scaffold0086 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 455
Target Start/End: Original strand, 2986 - 3050
Alignment:
Q  391 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 455  Q
    ||||||||| || || | ||||||||||| |||| |  |||||||||||| ||||||||||||||    
T  2986 cgtgtcggtatcagacacgacacgtgttcgacaccggaacacgcctaatccgaggagtgtccgtg 3050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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