View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_high_18 (Length: 462)
Name: NF18071_high_18
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 13 - 446
Target Start/End: Original strand, 30500617 - 30501051
Alignment:
| Q |
13 |
aaaatcagctcatatgaggaccaatcagacaagatggcatataacaaacaatttaaatggaaaatgacaagaatatgttcatcatagagtatgagatgtt |
112 |
Q |
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| T |
30500617 |
aaaatcagctcatatgaggaccaatcagacaagatggcatacaacaaacaattgaaatggaaaatgacaataatatgttcatcatagagtatgagatgtt |
30500716 |
T |
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| Q |
113 |
tgatccaaacacgcttacaactggcataataatgataaatatcactactgctcagtttgaattta-gcctatgatgttccagatgcttcaaactatttgt |
211 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||| |
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| T |
30500717 |
tgatccaaacacgcttacaactagcataataatgataaatatcactactgctcagtttgagtttaagcctatgatgtttcagatgcttcaaactatttgt |
30500816 |
T |
|
| Q |
212 |
caattttcaagagcagtcactgatgatcctcgtatgcgcttgaagcaattcacaaaagtggccaaaaattcaaaatcccagaagtagaagacgatgcttt |
311 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| |||||| |
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| T |
30500817 |
caattttcaggagcagtcactgatgatcctcgtatgcgcttgaaacaattcacaaaagtggcaaaaaattcaaaatcctagaagtagaagacggtgcttt |
30500916 |
T |
|
| Q |
312 |
caaactcaagttgttccccatattctcttaacgatggagccaaatcatgcttaaactcttcagagcctaactcggttgccacttagagagaagttgaaaa |
411 |
Q |
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| T |
30500917 |
caaactcaagttgttccccatattctcttaacggtggagccaaatcatggttaaactcttcatagcctaactcggatgccacttagagagaagttgaaaa |
30501016 |
T |
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| Q |
412 |
gttctcggtgaattattttccaatggtccttgatg |
446 |
Q |
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| T |
30501017 |
gttctcggtgaattattttccaatggtccttgatg |
30501051 |
T |
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