View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_high_19 (Length: 455)
Name: NF18071_high_19
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Complemental strand, 35213572 - 35213188
Alignment:
| Q |
18 |
agtactcttgtctggagtgattttaactgatatgtgaataactcgctcatannnnnnnaaaggaagtctaaaatttagccatgtgttacaactagctttg |
117 |
Q |
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| T |
35213572 |
agtactcttgtctggagtgattttaactgatatgtgaataactcgctcatatttttttaaaggaagtctaaaatttagccatgtgttacaactagctttg |
35213473 |
T |
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| Q |
118 |
gttctctacttctatagctttggtgaattgctaaaattgcaacgtgtggagacataaaattaaaggaggatgacacgaagaaaccaaactatgacttttg |
217 |
Q |
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| T |
35213472 |
gttctctacttctatagctttggtgaattgctaaaattgcaacgtgtggagacataaaattaaaggaggatgacacgaagaaaccaaactatgacttttg |
35213373 |
T |
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| Q |
218 |
ttgttttgtttataggaaacatgcatgattcagcattcttttgaaataaaataaaaatattgtactaatacttaattatttatactaagtagaacaaaac |
317 |
Q |
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| T |
35213372 |
ttgttttgtttatgggaaacatgcatgattcagcattcttttgaaataaaataaaaatattgtactaatac----ttatttatactaagtagaacaaaac |
35213277 |
T |
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| Q |
318 |
aatgccactgagcctaagttggtaacaatctttttctatcatggcagcacgcagatttttctccttggtttctcgttctcaatctttcc |
406 |
Q |
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| T |
35213276 |
aatgccactgagcctaagttggtaacaatctttttctatcatggcagcacgcagatttttctccttggtttctcgttctcaatctttcc |
35213188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 445
Target Start/End: Complemental strand, 35213155 - 35213116
Alignment:
| Q |
406 |
catacattaggtgacagaaaattatcactaatcacctatg |
445 |
Q |
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| T |
35213155 |
catacattaggtgacagaaaattatcactaatcacctatg |
35213116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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