View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_high_2 (Length: 725)
Name: NF18071_high_2
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 498; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 14 - 707
Target Start/End: Complemental strand, 23909420 - 23908744
Alignment:
| Q |
14 |
cataggtatgtgttttggtagcgtcaaggtccataggtatgacctcattgcattgtgtctgaattatcaatgtcaatttatacaggaacaaagtctatga |
113 |
Q |
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| T |
23909420 |
cataggtatgtgttttggtagcgtcaaggtccataggtatgacctcattgcattgtgtctgaattatcagtgtcaatttatacaggaacaaagtctatga |
23909321 |
T |
|
| Q |
114 |
tcaattctgaatcattagatacattgcgtaggtcgggtttcactgcatgattattttgtaattttcctttgtttgtcctttggatcaattcgattatatc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23909320 |
tcaattctgaatcattagatacattgcgtaggtcgggtttcactgcacgattattttgtatttttcctttgtttgtcctttggatcaattcgattatatc |
23909221 |
T |
|
| Q |
214 |
cttgataaacacaaacataattacactattacattataaattttactcaggtttgcggtcaagattgagattgnnnnnnnctggcttagtaaacatttat |
313 |
Q |
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| T |
23909220 |
cttgataaacacaaatgtaattacactattacattataaattttactcaggtttgcggtcaagattgagattgaaaaaaaatggcttagtaaacatttat |
23909121 |
T |
|
| Q |
314 |
gattggtgccgggacaaacttactaatctcttgaacaccagtcaccactagtaataataacagtgaattttttaaaattccagtaatactagaatcatgt |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
23909120 |
gattggtgccgggacaaacttactaatctcttgaacaccagtcaccactagtaataataacagtgaa-ttcttaaaattccagtaatactagaatcatgt |
23909022 |
T |
|
| Q |
414 |
atttatccaaattcaacnnnnnnntcaaacagaatgaacacaatttacagtagaaatcacatggtctaatctaaaaatcgaaactgttagaaattttgtt |
513 |
Q |
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| T |
23909021 |
atttatccaaattcaacaaaaaaatcaaacagaatgaacacaatttacagtagaaatcacatggtctaatctaaaaatcgaaactgtta----------- |
23908933 |
T |
|
| Q |
514 |
gttgggaaaaatgctggaacacacttaaacaatgaagaagacgacgaaggatgcacttgtgaacaccaaagggtgtatttccacgcaaacttttgggttc |
613 |
Q |
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|| ||||||||| | |||||| |||||||||| |||| || |||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
23908932 |
----gggaaaatgctgcagcacactcaaacaatgaaaaagaagatgaaggatgcacttgagaacaccaaagggtgtatttccacacaaacttttgggtt- |
23908838 |
T |
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| Q |
614 |
gatttgcccccaccaatatttgtatattggatgcgaacagaatgaccactgaatctccttcagaatactttgacaacacatatcaagcttatct |
707 |
Q |
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|||| |||||||||||||||| |||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
23908837 |
gattcgcccccaccaatatttatatattggatgcaaatagaatgaccactgaatttccttcagaatactttgacaacacataccaagcttatct |
23908744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 46 - 401
Target Start/End: Original strand, 23919836 - 23920188
Alignment:
| Q |
46 |
ataggtatgacctcattgcattgtgtctgaattatcaatgtcaatttatacaggaacaaagtctatgatcaattctgaatcattagatacattgcgtagg |
145 |
Q |
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||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||| |
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| T |
23919836 |
ataggtatgacctcattgcattgtgactgaattatcagtgtcgatttatacaggaacaaagtttatgatcaattctgattcattagatacattgcttagg |
23919935 |
T |
|
| Q |
146 |
tcgggtttcactgcatgattattttgtaattttcctttgtttgtcctttggatcaattcgattatatccttgataaacacaaacataattacactattac |
245 |
Q |
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||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23919936 |
tcgggtttcactgcacgattattttgtaattttcctttg-ttgtcctttagatcaattcgattatatccttcataaacacaaacataattacactattac |
23920034 |
T |
|
| Q |
246 |
attataaattttactcaggtttgcggtcaagattgagattgnnnnnnnctggcttagtaaacatttatgattggtgccgggacaaacttactaatctctt |
345 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23920035 |
attataaattttactcaggtttggggtcaagattgagattgaaaaaaa-tggcttagtaaacatttatgattggtgccgggacaaacttacttatctctt |
23920133 |
T |
|
| Q |
346 |
gaacaccagtcaccactagtaataataacagtgaattttttaaaattccagtaata |
401 |
Q |
| |
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||||||||||||||||||||||||||||||||| | || ||||||| ||||||||| |
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| T |
23920134 |
gaacaccagtcaccactagtaataataacagtgga-ttcttaaaataccagtaata |
23920188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 521 - 707
Target Start/End: Original strand, 23920196 - 23920382
Alignment:
| Q |
521 |
aaaatgctggaacacacttaaacaatgaagaagacgacgaaggatgcacttgtgaacaccaaagggtgtatttccacgcaaacttttgggttcgatttgc |
620 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| || |
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| T |
23920196 |
aaaatgctgcagcacacttaaacaatgaagaagacgacgaaggatgcacttgtgaacaccaaagggtgtattttcacgcaaacttttggattcaattcgc |
23920295 |
T |
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| Q |
621 |
ccccaccaatatttgtatattggatgcgaacagaatgaccactgaatctccttcagaatactttgacaacacatatcaagcttatct |
707 |
Q |
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| T |
23920296 |
ccccaccaatatttgtatattggatgcaaacagaatgaccactgaatctccttcagaatactttgacaacacatatcaagcttatct |
23920382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 609 - 647
Target Start/End: Complemental strand, 48366382 - 48366344
Alignment:
| Q |
609 |
ggttcgatttgcccccaccaatatttgtatattggatgc |
647 |
Q |
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||||||||||||||||||||||| ||||||||||||||| |
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| T |
48366382 |
ggttcgatttgcccccaccaataattgtatattggatgc |
48366344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 609 - 646
Target Start/End: Complemental strand, 17415515 - 17415478
Alignment:
| Q |
609 |
ggttcgatttgcccccaccaatatttgtatattggatg |
646 |
Q |
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| T |
17415515 |
ggttcgatttgcccccaccaataattgtatattggatg |
17415478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 609 - 647
Target Start/End: Complemental strand, 10186906 - 10186868
Alignment:
| Q |
609 |
ggttcgatttgcccccaccaatatttgtatattggatgc |
647 |
Q |
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| T |
10186906 |
ggttcgattcgcccccaccaataattgtatattggatgc |
10186868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 609 - 647
Target Start/End: Original strand, 43358625 - 43358663
Alignment:
| Q |
609 |
ggttcgatttgcccccaccaatatttgtatattggatgc |
647 |
Q |
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| T |
43358625 |
ggttcgatttgcccccaccaataactgtatattggatgc |
43358663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 609 - 647
Target Start/End: Complemental strand, 5436861 - 5436823
Alignment:
| Q |
609 |
ggttcgatttgcccccaccaatatttgtatattggatgc |
647 |
Q |
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||||||||||||||||||||||| |||||||||||||| |
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| T |
5436861 |
ggttcgatttgcccccaccaataactgtatattggatgc |
5436823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 609 - 682
Target Start/End: Original strand, 14610238 - 14610311
Alignment:
| Q |
609 |
ggttcgatttgcccccaccaatatttgtatattggatgcgaacagaatgaccactgaatctccttcagaatact |
682 |
Q |
| |
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||||||||| ||||||||||||| |||||||||||||| | ||||||||| ||||| ||||||| ||||| |
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| T |
14610238 |
ggttcgattcgcccccaccaataaatgtatattggatgcaataggaatgaccagcgaatccccttcaggatact |
14610311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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