View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_high_21 (Length: 445)
Name: NF18071_high_21
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Original strand, 29203717 - 29204129
Alignment:
| Q |
18 |
ataaaatgcctcgaaaaaatttaatatagttataaacatataatatggcaaactaattatagatgtttgtctagctcagttaggcaagatcaaggcctca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29203717 |
ataaaatgcctcgaaaaaatttaatatagttataaacatataatatggcaaactaattatagatgtttgtctagctcagttaggcaagatcaaggcctca |
29203816 |
T |
|
| Q |
118 |
aatcctctcggtcaaacttgatattattgttctttttataagcattgtgtttatttatttaaattttaaaaggcctgatcataaatttgctttaggcctc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29203817 |
aatcctctcggtcaaacttgatattattgttctttttataagcattgtgtttatttatttaaattttaaaaggcctgatcataaatttgctttaggcctc |
29203916 |
T |
|
| Q |
218 |
ttaacacgttgggccggccctgattaggtagtataaacagaaaattgtgttcccannnnnnnnnnnnnnnnnnnnnnactgctatcataataatgcttga |
317 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29203917 |
ttaacacattgggccggccctgattaggtagtataaacagaaaattgtgttcccattttttgagatttttttcttttactgctatcataataatgcttga |
29204016 |
T |
|
| Q |
318 |
aatcttctgcaccatgtagagaaaaatatttaactctttgtgagcaaatacacgatgaaagggcagaatcatcaaatagcatggctgatgaagagagttc |
417 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29204017 |
aatcttctgcaccatgtagagaaaaatatttaactctttgtgagcaaatacacgatgaaagggcagaatcatcaaatagcatggctgatgaagagagttc |
29204116 |
T |
|
| Q |
418 |
agtggatgatgat |
430 |
Q |
| |
|
||||||||||||| |
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|
| T |
29204117 |
agtggatgatgat |
29204129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 244
Target Start/End: Complemental strand, 43585389 - 43585278
Alignment:
| Q |
132 |
aacttgatattattgttctttttataagcattgtgtttatttatttaaattttaaaaggcctgatcataaa-tttgctttaggcctcttaacacgttggg |
230 |
Q |
| |
|
|||||||| ||||| | ||||| |||||||||||||| |||| ||| |||| ||||| ||| || ||||| |||| |||||||||||| ||| |||||| |
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| T |
43585389 |
aacttgat-ttattatgcttttaataagcattgtgtt-attttttttaattccaaaagacctaattataaaatttgttttaggcctcttgacatgttggg |
43585292 |
T |
|
| Q |
231 |
ccggccctgattag |
244 |
Q |
| |
|
||||||||||||| |
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| T |
43585291 |
tcggccctgattag |
43585278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 20 - 430
Target Start/End: Complemental strand, 12648157 - 12647747
Alignment:
| Q |
20 |
aaaatgcctcgaaaaaatttaatatagttataaacatataatatggcaaactaattatagatgtttgtctagctcagttaggcaagatcaaggcctcaaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12648157 |
aaaatgcctcgaaaaaatttaatatagttataaacatataatatgacaaactaattatagatgtttgtctagctcagttaggcaagatcaaggcctcaaa |
12648058 |
T |
|
| Q |
120 |
tcctctcggtcaaacttgatattattgttctttttataagcattgtgtttatttatttaaattttaaaaggcctgatcataaatttgctttaggcctctt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12648057 |
tcctctcggtcaaacttgatattattgttctttttataagcattgtgtttatttatttaaattttaaaaggcctgatcataaatttgctttaggcctctt |
12647958 |
T |
|
| Q |
220 |
aacacgttgggccggccctgattaggtagtataaacagaaaattgtgttcccannnnnnnnnnnnnnnnnnnnnnactgctatcataataatgcttgaaa |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
12647957 |
aacacgttgggccggccctgattaggtagtataaacagaaaattgtgttcccattttttgagatttttttcttttactgctatcataataatgcttgaaa |
12647858 |
T |
|
| Q |
320 |
tcttctgcaccatgtagagaaaaatatttaactctttgtgagcaaatacacgatgaaagggcagaatcatcaaatagcatggctgatgaagagagttcag |
419 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12647857 |
tcttctgcaccatatagagaaaaatatttaactctttgtgagcaaatacacgatgaaagggcagaatcatcaaatagcatggctgatgaagagagttcag |
12647758 |
T |
|
| Q |
420 |
tggatgatgat |
430 |
Q |
| |
|
||||||||||| |
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|
| T |
12647757 |
tggatgatgat |
12647747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 132 - 244
Target Start/End: Complemental strand, 13511015 - 13510904
Alignment:
| Q |
132 |
aacttgatattattgttctttttataagcattgtgtttatttatttaaattttaaaaggcctgatcataaa-tttgctttaggcctcttaacacgttggg |
230 |
Q |
| |
|
|||||||| ||||| | ||||| |||||||||||||| |||| ||| |||| ||||| ||| |||||||| ||||||||||||||||| ||| |||||| |
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| T |
13511015 |
aacttgat-ttattatgcttttaataagcattgtgtt-attttttttaattccaaaagacctaatcataaaatttgctttaggcctcttgacatgttggg |
13510918 |
T |
|
| Q |
231 |
ccggccctgattag |
244 |
Q |
| |
|
||||||||||||| |
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|
| T |
13510917 |
tcggccctgattag |
13510904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 244
Target Start/End: Complemental strand, 24579887 - 24579776
Alignment:
| Q |
132 |
aacttgatattattgttctttttataagcattgtgtttatttatttaaattttaaaaggcctgatcataaa-tttgctttaggcctcttaacacgttggg |
230 |
Q |
| |
|
|||||||| ||||| | ||||| |||||||||||||| |||| ||||| || ||||| ||| || ||||| ||||||||| ||||||| ||| |||||| |
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| T |
24579887 |
aacttgat-ttattatgcttttaataagcattgtgttaatttttttaa-ttccaaaagacctaattataaaatttgctttaagcctcttgacatgttggg |
24579790 |
T |
|
| Q |
231 |
ccggccctgattag |
244 |
Q |
| |
|
||||||||||||| |
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|
| T |
24579789 |
tcggccctgattag |
24579776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 33440518 - 33440458
Alignment:
| Q |
180 |
attttaaaaggcctgatcataaa-tttgctttaggcctcttaacacgttgggccggccctg |
239 |
Q |
| |
|
||||||||||| || || ||||| ||||||||||||||||| ||| ||| ||||||||||| |
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|
| T |
33440518 |
attttaaaaggtctcattataaaatttgctttaggcctcttgacatgtttggccggccctg |
33440458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 34912184 - 34912116
Alignment:
| Q |
162 |
ttgtgtttatttatttaaattttaaaaggcctgatcataaatttgctttaggcctcttaacacgttggg |
230 |
Q |
| |
|
|||||||| |||| || |||||||||||| ||| ||| ||||||||||||||||| |||| |||||| |
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|
| T |
34912184 |
ttgtgtttttttaattttattttaaaaggcttgactatatatttgctttaggcctctaaacatgttggg |
34912116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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