View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_high_24 (Length: 441)
Name: NF18071_high_24
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 14 - 424
Target Start/End: Complemental strand, 31432417 - 31432007
Alignment:
| Q |
14 |
agatacacatgctttttaacataaaaactacggttttaaaagtagaactaagtgagaacctatagacctttgatattaacccatacatcatgatttcatt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31432417 |
agatacacatgctttttaacataaaaactacggttttaaaagtagaactaagtgagaacctatagacctttgatattaacccatacatcatgatttcatt |
31432318 |
T |
|
| Q |
114 |
tcatttataattattttactcaatatttccatatcattcagcaatgaactcaaattatcaatattaaaaagtcactacttgtcccagttggttaaatata |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31432317 |
tcatttataattattttactcaatatttccatatcattcagcaatgaactcaaattatcaatattaaaaagtcactacttgtcccagctggttaaatata |
31432218 |
T |
|
| Q |
214 |
tgataaataaagcaacattataagctgcactagccctaagtttccaacgaatttaaggagagcagaatttctttcaagtaataatccaaagaacctcaaa |
313 |
Q |
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| T |
31432217 |
tgataaataaagcaacattataagctgcactagccctaagtttccaacgaatttaaggagagcagaatttctttcaagtaataatccaaagaacctcaaa |
31432118 |
T |
|
| Q |
314 |
ctcgtcaatatggaacacaattgaaaggaaaacaatgccatatgggctatgacttcactttcgcaaggttaattgatgaaaaggcaaacatgattaacac |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31432117 |
ctcgtcaatatggaacacaattgaaaggaaaacaatgccatatgggctatgacttcactttcgcaaggttaattgatggaaaggcaaacatgattaacac |
31432018 |
T |
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| Q |
414 |
aagcatattgt |
424 |
Q |
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| T |
31432017 |
aagcatattgt |
31432007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 31431252 - 31431037
Alignment:
| Q |
21 |
catgctttttaacataaaaactacggttttaaaagtagaactaagtgagaacctatagacctttgatattaacccatacatcatgatttcatttcattta |
120 |
Q |
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||||||||||||||||| |||||| |||| ||||| |||||| | ||||||||||| || | ||||| | | | |||||| ||||||||| || |
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| T |
31431252 |
catgctttttaacataagaactacagttt-aaaagcagaactgaccgagaacctatattccatcgatataaccacgtacatc-----ttcatttcagttt |
31431159 |
T |
|
| Q |
121 |
taattattttactcaatatttccata---tcattcagcaatgaactcaaattatcaatatt-aaaaagtcactacttgtcccagttggttaaatatatga |
216 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||| ||||||||| ||| | || || |||| |||||| ||| |
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| T |
31431158 |
taattattttactcgatatttccataagctcattcagcaatgaattcaaattatcaatattgaaaaagtcaatacacgccctagctggtcaaatatttga |
31431059 |
T |
|
| Q |
217 |
taaataaagcaacattataagc |
238 |
Q |
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| T |
31431058 |
taaataaagcaacattataagc |
31431037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 238
Target Start/End: Original strand, 37549365 - 37549440
Alignment:
| Q |
163 |
tcaaattatcaatattaaaaagtcactacttgtcccagttggttaaatatatgataaataaagcaacattataagc |
238 |
Q |
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| T |
37549365 |
tcaaattatcaatgtttaaaagtcactacacaccccagttgatcaaatatttgataaataaagcaacggtataagc |
37549440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 238
Target Start/End: Original strand, 41282798 - 41282874
Alignment:
| Q |
163 |
tcaaattatcaatatt-aaaaagtcactacttgtcccagttggttaaatatatgataaataaagcaacattataagc |
238 |
Q |
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||||||||||||| || ||||||||||||| ||||| |||| |||||| |||||||||||||||| ||||||| |
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| T |
41282798 |
tcaaattatcaatgttgaaaaagtcactacacaacccagctggtcaaatatttgataaataaagcaacgctataagc |
41282874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 352
Target Start/End: Original strand, 41282922 - 41282986
Alignment:
| Q |
288 |
caagtaataatccaaagaacctcaaactcgtcaatatggaacacaattgaaaggaaaacaatgcc |
352 |
Q |
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|||| ||| ||| ||||||||||||| || |||| ||| ||||| ||||||||||||||||||| |
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| T |
41282922 |
caagcaatcatctaaagaacctcaaattcttcaacatgccacacatttgaaaggaaaacaatgcc |
41282986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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