View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_high_25 (Length: 426)
Name: NF18071_high_25
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_high_25 |
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Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Original strand, 14735032 - 14735425
Alignment:
| Q |
18 |
aattcttggaccttggaataggagtttcatatatgagataggataagtagcggttagtcaagcgcttagccatttctagtgagaagtattgagagatgag |
117 |
Q |
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| T |
14735032 |
aattcttggaccttggaataggagtttcat----gagataggataagtagccgttagtcaagcggttagccatttctagtgagaagtattgagagatgag |
14735127 |
T |
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| Q |
118 |
caagaaattcttgaagcaccaggttcaaaatgatgggactcgagtaaaattggaatcaccactggtatggtctttgattttcttagttcactgactttaa |
217 |
Q |
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| T |
14735128 |
taagaaattcttgaagcaccaggttcaaaatgatgggactcgagtaaaactggaatcaccactggtatggtctttgattttcttagttcactgactttaa |
14735227 |
T |
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| Q |
218 |
gtataaacaaaaaatgtcagccggttagaaaagagttcggtgtgagacaacgtggttttctaagttttgtgtagacgtgattatctccacaactctatgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
14735228 |
gtataaacaaaaaatgtcagccggttagaaaagagttcggtgtgag-caacgtggttttctaagttttgtgtagatgtgattatctccacaactctatgt |
14735326 |
T |
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| Q |
318 |
tttgcttgattaacttgttaattcttgccataatgatgaattaagg---ttacgtgatttctagactcgatacgtgcatttgggtacttggaattgatg |
413 |
Q |
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| T |
14735327 |
tttgcttgattaacttgttaattcttgccataatgatgaattaaggtgtttacgtgatttctagactcgatacgtgcatttgggtacttggaattgatg |
14735425 |
T |
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