View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18071_high_28 (Length: 409)
Name: NF18071_high_28
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_high_28 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 9 - 267
Target Start/End: Original strand, 33422350 - 33422610
Alignment:
| Q |
9 |
agcaaaggaatatgctggtaagctcaagtgttacaaac---atactgatgaaagtccttcaacagctactcggtatgggatttgaagtattccaacagtc |
105 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
33422350 |
agcaaaggaatatgcgggtaagctcaagtgttacaaactcaacactgatgaaagtccttcagttgctactcggtatgggattcgaagtattccaactgtc |
33422449 |
T |
|
| Q |
106 |
attttcttcaagaaaggtgaaaagaaagatacagttattgttgctgtgcccaaagcaaacattgaccacagatatagaaaaattcctgtgagatggcaga |
205 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33422450 |
attttcttcaagaacggtgaaaagaaagatacagttattggtgctgtgccaaaagcaa-cattgaccacaaatatagaaaaattcctgtgagatggcaga |
33422548 |
T |
|
| Q |
206 |
caaagaaggcttcagctggaagtaaagttatttttcccattagcgacatatcatcaagccaa |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33422549 |
caaagaaggcttcagctggaagtaaagttatttttcccattagcgacatatcatcaagccaa |
33422610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 348 - 391
Target Start/End: Original strand, 33858439 - 33858482
Alignment:
| Q |
348 |
agtcctgccttctgttacaaaacacagcagaagcaaagaacaag |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33858439 |
agtcctgccttctgttacaaaacacagcagaagcaaagaacaag |
33858482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 158
Target Start/End: Original strand, 20543549 - 20543679
Alignment:
| Q |
31 |
ctcaagtgttacaaac---atactgatgaaagtccttcaacagctactcggtatgggatttgaagtattccaacagtcattttcttcaagaaaggtgaaa |
127 |
Q |
| |
|
|||||||||||||||| |||| ||||| ||||||||||| ||||| ||||| || ||| |||||||||| ||||| || ||||||| | ||||| | |
|
|
| T |
20543549 |
ctcaagtgttacaaactcaataccgatgagagtccttcaactgctacccggtacggaattcgaagtattccgacagttatgatcttcaaagatggtgaga |
20543648 |
T |
|
| Q |
128 |
agaaagatacagttattgttgctgtgcccaa |
158 |
Q |
| |
|
| ||||| |||||||||| ||||||||||| |
|
|
| T |
20543649 |
aaaaagacacagttattggagctgtgcccaa |
20543679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 16989933 - 16989885
Alignment:
| Q |
299 |
aagccaagcaccagaagtgcaaaaagaggctagctgttacaacaaaacaa |
348 |
Q |
| |
|
|||||||||||| ||||||| |||||| ||||||||||||||| |||||| |
|
|
| T |
16989933 |
aagccaagcaccggaagtgctaaaaga-gctagctgttacaaccaaacaa |
16989885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University