View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_high_40 (Length: 368)
Name: NF18071_high_40
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 6 - 265
Target Start/End: Original strand, 44523937 - 44524199
Alignment:
| Q |
6 |
ctaaagtacatgttacacttacatatatatgttgaataaccaacggtaataaacatggtataaagagatatacattaagtgtctgcatagctattatgtg |
105 |
Q |
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| T |
44523937 |
ctaaagtacatgttacacttacatatatatgtcgaataaccaacggtaataaacatgatataaagagatatacattaagtgtcttcatggctattatttg |
44524036 |
T |
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| Q |
106 |
ctgttgataagccaacggtaataaacatcatataaggaaatatacttatggtttgactccatgtattaatgcattgcattcacacatattcctttccaat |
205 |
Q |
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| T |
44524037 |
cttttgataagccaacagtaataaacatcatataaggaaatatacttatggtttgactccatgtattaaggcattacattcacacatattcctttccaat |
44524136 |
T |
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| Q |
206 |
agtttgtttgatttctcttgatttgat---tcattaagagaggaatcttcattattctttaca |
265 |
Q |
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| T |
44524137 |
ggtttgtttgatttctcttgatttgattcatcattaagagaggaatcttcattattctttaca |
44524199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 81 - 265
Target Start/End: Complemental strand, 41319115 - 41318931
Alignment:
| Q |
81 |
taagtgtctgcatagctattatgtgctgttgataagccaacggtaataaacatcatataaggaaatatacttatggtttgactccatgtattaatgcatt |
180 |
Q |
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| T |
41319115 |
taagtgtcttcatggctattatttgcttttgataagtcaacggtaataaacatcatataagtaaatatacttatggtttgactccatgtattaaggcatt |
41319016 |
T |
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| Q |
181 |
gcattcacacatattcctttccaatagtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttaca |
265 |
Q |
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| T |
41319015 |
gcattcacacatattcctttccaatggtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttaca |
41318931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 41322188 - 41322105
Alignment:
| Q |
1 |
tatcactaaagtacatgttacacttacatatatatgttgaataaccaacggtaataaacatggtataaagagatatacattaag |
84 |
Q |
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| T |
41322188 |
tatctctaaagtacatgttacacttacatatatatgttgaataaccaacggtaataaacatgatataaagagatatacattaag |
41322105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 24 - 266
Target Start/End: Original strand, 12503296 - 12503538
Alignment:
| Q |
24 |
ttacatatatatgttgaataaccaacggtaataaacatggtataaagagatatacattaagtgtctgcatagctattatgtgctgttgataagccaacgg |
123 |
Q |
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| T |
12503296 |
ttacatatatatgactaatagccaacggtaatgcacatgatataaggaaatatacattaagtggctttatggctattatttccttttgataagccaacgg |
12503395 |
T |
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| Q |
124 |
taataaacatcatataaggaaatatactta------------tggtttgactccatgtattaatgcattgcattcacacatattcctttccaatagtttg |
211 |
Q |
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| T |
12503396 |
taataaaccatatataaggaaatatacttaagtgcctctatttggtttgactccatgtatcaaggcattgcattcacac--attgatttccaa------- |
12503486 |
T |
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| Q |
212 |
tttgatttctcttgatttgattcattaagagaggaatcttcattattctttacac |
266 |
Q |
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| T |
12503487 |
--tggtttatcttgatttgattcattaa-agaggaatcttcgttattctttacac |
12503538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 11831185 - 11831253
Alignment:
| Q |
197 |
ctttccaatagtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttaca |
265 |
Q |
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| T |
11831185 |
ctttccaatagtttgtttgatttgtcttgatttgattcattaatagttgagtcttcattattctttaca |
11831253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 265
Target Start/End: Complemental strand, 37130580 - 37130522
Alignment:
| Q |
207 |
gtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttaca |
265 |
Q |
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| T |
37130580 |
gtttttttgatttgtcttgatttgattcattaatagttgagttttcattattctttaca |
37130522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 11831182 - 11831133
Alignment:
| Q |
216 |
atttctcttgatttgattcattaagagaggaatcttcattattctttaca |
265 |
Q |
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| T |
11831182 |
atttgtcttgatttgattcattaatagttgagtcttcattattctttaca |
11831133 |
T |
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