View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18071_high_46 (Length: 344)
Name: NF18071_high_46
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_high_46 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 93 - 324
Target Start/End: Original strand, 39185319 - 39185550
Alignment:
| Q |
93 |
agcaatagcagcaagtctcagagacccaacagaacgatataaaccccaatcctaagagtcccaaactcgaattcgaagatacaacaacgaatctgaaaca |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39185319 |
agcaatagcagcaagtctcagagacccaacagaacgatagaaaccccaatcctaagagacccaaactcgaattcaaagatacaacaacgaatctgaaaca |
39185418 |
T |
|
| Q |
193 |
aaaacacaaaccacaggttctctctatcttggagtcacgtgaaaatgagaacaagagaatgctagggattatgtatgtggccttagaaattatacctttt |
292 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39185419 |
aaaacacaaaacacaggttctctctatcttggagtcacgtgaaaatgagaacaagagaatgctagggattatgtatgtggccttagaaattatacctttt |
39185518 |
T |
|
| Q |
293 |
ggatggtaccatcgggggaggcgtgtgaatat |
324 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
39185519 |
ggatggtaccatcgggggaggcgtatgaatat |
39185550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 210 - 326
Target Start/End: Original strand, 39185884 - 39186001
Alignment:
| Q |
210 |
ttctctctatcttggagtcacgtgaaaatgagaacaagagaatgctagggattatgtatgtggccttagaaattataccttttggatggtacca-tcggg |
308 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||| || ||||| |
|
|
| T |
39185884 |
ttctcactatcttggagtcatgtgaaaatgagaacaagagaatgctagagattatgcatgtggccttagaaattatatattttggatggtatcattcggg |
39185983 |
T |
|
| Q |
309 |
ggaggcgtgtgaatatat |
326 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
39185984 |
ggaggcgtgtaaatatat |
39186001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 27173340 - 27173279
Alignment:
| Q |
217 |
tatcttggagtcacgtgaaaatgagaacaagagaatgctagggattatgtatgtggccttagaaatt |
283 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
27173340 |
tatcttggagtcacgtgaaattgagaacaagagaatgc-----attatgattgtggccttagaaatt |
27173279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 326
Target Start/End: Complemental strand, 44436033 - 44435936
Alignment:
| Q |
228 |
cacgtgaaaatgagaacaagagaatgctagggattatgtatgtggccttagaaattataccttttggatggtaccatcgggggaggcgtgtgaatatat |
326 |
Q |
| |
|
|||| |||||| |||||||||||||| ||| ||||||| ||||||||| | ||||||| | ||||||| |||||| | ||||||| ||||||||||| |
|
|
| T |
44436033 |
cacgcgaaaataagaacaagagaatgttagagattatgcttgtggcctttggaattatatcgtttggattgtaccagc-agggaggcatgtgaatatat |
44435936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University