View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_high_51 (Length: 320)
Name: NF18071_high_51
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_high_51 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: scaffold0372 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 30 - 309
Target Start/End: Complemental strand, 12067 - 11791
Alignment:
| Q |
30 |
taagaatgtaatataactaattgaaatggctcattttatccgttgaaattgctcatgataagggttggtttaacctctagctggaatgtgattttatgct |
129 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12067 |
taagaatgtaatataactaattgaaacggctcattttatccgttgaaattgctcatgataagggttggtttaacctctagctggaatgtgattttatgct |
11968 |
T |
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| Q |
130 |
tgttgatcaagtcgatcttctcatatttttcaataac-ggtgctgataaacttgtgaatcatggacacttgattatgggtgcttgatggtcgaattcttt |
228 |
Q |
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| T |
11967 |
tgttgatcaagtc----ttctcatatttttcaataattggtgctgataaacttgcgaatcatggacactcgattctgggtgcttgatggtcgaattcttt |
11872 |
T |
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| Q |
229 |
atttgagtttatttgggaacctttcttcaaagaccattatggtttgcctatgtatcgttttctcaaatttttctttccttt |
309 |
Q |
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| T |
11871 |
atttgagtttatttgggaacctttctttaaagaccgttatggtttgtctatgtatcgttttctcaaatttttctttccttt |
11791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 30 - 309
Target Start/End: Complemental strand, 21367542 - 21367266
Alignment:
| Q |
30 |
taagaatgtaatataactaattgaaatggctcattttatccgttgaaattgctcatgataagggttggtttaacctctagctggaatgtgattttatgct |
129 |
Q |
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| T |
21367542 |
taagaatgtaatataactaattgaaacggctcattttatccgttgaaattgctcatgataagggttggtttaacctctagctggaatgtgattttatgct |
21367443 |
T |
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| Q |
130 |
tgttgatcaagtcgatcttctcatatttttcaataac-ggtgctgataaacttgtgaatcatggacacttgattatgggtgcttgatggtcgaattcttt |
228 |
Q |
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| T |
21367442 |
tgttgatcaagtc----ttctcatatttttcaataattggtgctgataaacttgcgaatcatggacactcgattctgggtgcttgatggtcgaattcttt |
21367347 |
T |
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| Q |
229 |
atttgagtttatttgggaacctttcttcaaagaccattatggtttgcctatgtatcgttttctcaaatttttctttccttt |
309 |
Q |
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| T |
21367346 |
atttgagtttatttgggaacctttctttaaagaccgttatggtttgtctatgtatcgttttctcaaatttttctttccttt |
21367266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 33025748 - 33025715
Alignment:
| Q |
72 |
ttgaaattgctcatgataagggttggtttaacct |
105 |
Q |
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| T |
33025748 |
ttgaaattgctcatgataagggttggtttaacct |
33025715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 30 - 309
Target Start/End: Original strand, 23901027 - 23901303
Alignment:
| Q |
30 |
taagaatgtaatataactaattgaaatggctcattttatccgttgaaattgctcatgataagggttggtttaacctctagctggaatgtgattttatgct |
129 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23901027 |
taagaatgtaatataactaattgaaacggctcattttatccgttgaaattgctcatgataagggttggtttaacctctagctggaatgtgattttatgct |
23901126 |
T |
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| Q |
130 |
tgttgatcaagtcgatcttctcatatttttcaataac-ggtgctgataaacttgtgaatcatggacacttgattatgggtgcttgatggtcgaattcttt |
228 |
Q |
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||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
23901127 |
tgttgatcaagtc----ttctcatatttttcaataattggtgctgataaacttgcgaatcatggacactcgattctgggtgcttgatggtcgaattcttt |
23901222 |
T |
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| Q |
229 |
atttgagtttatttgggaacctttcttcaaagaccattatggtttgcctatgtatcgttttctcaaatttttctttccttt |
309 |
Q |
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||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23901223 |
atttgagtttatttgggaacctttctttaaagaccgttatggtttgtctatgtatcgttttctcaaatttttctttccttt |
23901303 |
T |
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