View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_high_52 (Length: 318)
Name: NF18071_high_52
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_high_52 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 302
Target Start/End: Original strand, 1651377 - 1651667
Alignment:
| Q |
13 |
aaaatacccattttgatagtttaacttgatttgtgattttctgcaatttggggtttctgatttgggaattaataggtgttgtaaccttgtgctccttttt |
112 |
Q |
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| T |
1651377 |
aaaatacccattttgatagtttaacttgatttgtgattttctgcaatttggggtttctgatttgggaattaataggtgttgtaaccttgtgctccttttt |
1651476 |
T |
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| Q |
113 |
atgtgattgttatgagataaattttctatctttgttgcaccttgattttgtgc-tttagctaatgaatagattggttgtattttaactaagtgattgagc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1651477 |
atgtgattgttatgagataaattttctatctttgttgcaccttgattttgtgcttttagctaatgaatagattggttgtattttaactaagtgattgagc |
1651576 |
T |
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| Q |
212 |
tcaaatgattaacgagctcgacaaatcatttaggaaaaccccaatttgattcctcgatggagtaattcttggccagactttacttgcttct |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1651577 |
tcaaatgattaacgagctcgacaaatcatttaggaaaaccccaatttgattcctcgatggagtaattcttggccagaccttacttgcttct |
1651667 |
T |
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