View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_high_53 (Length: 318)
Name: NF18071_high_53
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_high_53 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 36391265 - 36391542
Alignment:
| Q |
19 |
gtagacactacaacaaatatcacgatcaaatctttcttttgatttgtctttaaaccttgtttaatttaccgaatacgattgaaattaatttaatttgaga |
118 |
Q |
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| T |
36391265 |
gtagacactacaacaaatatcacgatcacatctttcttttgatttgtgattaaaccctgtttaatttaccgaatacgattaaaatgaattgaatttgaga |
36391364 |
T |
|
| Q |
119 |
acactacaacaaattatagtgttttaatgagtttgtagaaataagcgtggaagaacacgtcagaaaaaggcagtgaagaaatgcttcggaaaaaagcaaa |
218 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| || |||| ||||||||||||||||||||||||||||||||| |
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| T |
36391365 |
acactacaacaaattagagtgttttaatgagtttgtagaaataagcgtggatgaacacatcggaaagaggcagtgaagaaatgcttcggaaaaaagcaaa |
36391464 |
T |
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| Q |
219 |
tagagaatatggcacggctgacatgcgagctgtagagacagtggcaagtaatactgctgttgaagaagacattgtgtt |
296 |
Q |
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| T |
36391465 |
tagagaatatggcacggctgacatgcaagctgtagagacaatggcaggtaatactgctgttgaagaaggcactgtgtt |
36391542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 122 - 285
Target Start/End: Complemental strand, 40449825 - 40449660
Alignment:
| Q |
122 |
ctacaacaaattatagtgttttaatgagtttgtagaaataagcgtggaagaacacgtcagaaaaaggcagtgaagaaa--tgcttcggaaaaaagcaaat |
219 |
Q |
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| T |
40449825 |
ctacaacaaattagagtgttttaatgagtttgtagaaataagcgtggatgaacacgtcggaaagaggcagtgaagaaaaatgcttcggaaaaaagcaaat |
40449726 |
T |
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| Q |
220 |
agagaatatggcacggctgacatgcgagctgtagagacagtggcaagtaatactgctgttgaagaa |
285 |
Q |
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| T |
40449725 |
agagaatatggcacggctgacatgcgagctgtagagacaatagcaggtaatactgctgttgaagaa |
40449660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 40450719 - 40450619
Alignment:
| Q |
19 |
gtagacactacaacaaatatcacgatcaaatctttcttttgatttgtctttaaaccttgtttaatttaccgaatacgattgaaattaatttaatttgaga |
118 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||| |
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| T |
40450719 |
gtagacactacaacaaatatcacgatcgcatctttcttttgatttgtctt------------aatttaccgaatacgattgaaatgaattgaatttgaga |
40450632 |
T |
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| Q |
119 |
acactacaacaaa |
131 |
Q |
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| T |
40450631 |
acactacaacaaa |
40450619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 35107213 - 35107141
Alignment:
| Q |
141 |
tttaatgagtttgtagaaataagcgtggaagaacacgtcagaaaaaggcagtgaagaaatgcttcggaaaaaa |
213 |
Q |
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||||||||||||||||||||||||||||| ||||||||| ||| | | ||||||||||||||||| |||||| |
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| T |
35107213 |
tttaatgagtttgtagaaataagcgtggatgaacacgtcgaaaataagaagtgaagaaatgcttcgaaaaaaa |
35107141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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