View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18071_high_55 (Length: 310)

Name: NF18071_high_55
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18071_high_55
NF18071_high_55
[»] chr7 (6 HSPs)
chr7 (234-270)||(35707962-35707998)
chr7 (148-202)||(29059827-29059881)
chr7 (148-202)||(31492125-31492179)
chr7 (234-270)||(31492219-31492255)
chr7 (234-270)||(36821069-36821105)
chr7 (234-270)||(42741798-42741834)
[»] chr5 (3 HSPs)
chr5 (234-270)||(10592043-10592079)
chr5 (148-202)||(10591949-10592003)
chr5 (234-270)||(5123487-5123523)
[»] chr4 (6 HSPs)
chr4 (234-270)||(14854721-14854757)
chr4 (148-202)||(31307131-31307185)
chr4 (148-202)||(38766111-38766165)
chr4 (234-270)||(9012386-9012422)
chr4 (234-270)||(31307055-31307091)
chr4 (234-270)||(38766205-38766241)
[»] chr2 (5 HSPs)
chr2 (234-270)||(25423860-25423896)
chr2 (159-202)||(13153988-13154031)
chr2 (148-202)||(42745181-42745235)
chr2 (148-202)||(44732638-44732692)
chr2 (234-270)||(42745105-42745141)
[»] chr1 (8 HSPs)
chr1 (234-270)||(18428131-18428167)
chr1 (114-202)||(9781054-9781150)
chr1 (148-202)||(45806258-45806312)
chr1 (234-270)||(16756198-16756234)
chr1 (234-270)||(22022236-22022272)
chr1 (234-270)||(36806727-36806763)
chr1 (234-270)||(42297431-42297467)
chr1 (239-271)||(45806357-45806389)
[»] scaffold0182 (1 HSPs)
scaffold0182 (148-202)||(26353-26407)
[»] chr8 (5 HSPs)
chr8 (148-202)||(2743955-2744009)
chr8 (148-202)||(36994565-36994619)
chr8 (234-270)||(2744049-2744085)
chr8 (234-270)||(4125013-4125049)
chr8 (234-270)||(7839242-7839278)
[»] chr6 (2 HSPs)
chr6 (148-202)||(12411170-12411224)
chr6 (156-202)||(25084064-25084110)
[»] chr3 (3 HSPs)
chr3 (149-199)||(39950235-39950285)
chr3 (234-270)||(8757460-8757496)
chr3 (234-270)||(40318438-40318474)


Alignment Details
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 35707962 - 35707998
Alignment:
Q  234 cgagggattagtctctgcagttgcgcgtggaggatac 270  Q
    |||||||||||||||||||||||||||||||||||||    
T  35707962 cgagggattagtctctgcagttgcgcgtggaggatac 35707998  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 29059827 - 29059881
Alignment:
Q  148 taaccaaggtcttgagtttgaatccagtcttggacacgcagcagtgttaaaactc 202  Q
    ||||||||||| || ||| |||||||| ||||| || ||||||||||||||||||    
T  29059827 taaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactc 29059881  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 31492125 - 31492179
Alignment:
Q  148 taaccaaggtcttgagtttgaatccagtcttggacacgcagcagtgttaaaactc 202  Q
    ||||||||||| || ||| |||||||| ||||| || ||||||||||||||||||    
T  31492125 taaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactc 31492179  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 31492219 - 31492255
Alignment:
Q  234 cgagggattagtctctgcagttgcgcgtggaggatac 270  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  31492219 cgagggattagtctccgcagttgcgcgcggaggatac 31492255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 36821105 - 36821069
Alignment:
Q  234 cgagggattagtctctgcagttgcgcgtggaggatac 270  Q
    |||||||||||||||||||||||||||  ||||||||    
T  36821105 cgagggattagtctctgcagttgcgcgcagaggatac 36821069  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 42741834 - 42741798
Alignment:
Q  234 cgagggattagtctctgcagttgcgcgtggaggatac 270  Q
    |||||||||| |||||||||||||||| |||||||||    
T  42741834 cgagggattaatctctgcagttgcgcgcggaggatac 42741798  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 10592043 - 10592079
Alignment:
Q  234 cgagggattagtctctgcagttgcgcgtggaggatac 270  Q
    ||||||||||||||||||||||||||| |||||||||    
T  10592043 cgagggattagtctctgcagttgcgcgcggaggatac 10592079  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 10591949 - 10592003
Alignment:
Q  148 taaccaaggtcttgagtttgaatccagtcttggacacgcagcagtgttaaaactc 202  Q
    ||||||||||| || ||| |||||||| ||||| || ||||||||||||||||||    
T  10591949 taaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactc 10592003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 5123523 - 5123487
Alignment:
Q  234 cgagggattagtctctgcagttgcgcgtggaggatac 270  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  5123523 cgagggattagtctccgcagttgcgcgcggaggatac 5123487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 14854721 - 14854757
Alignment:
Q  234 cgagggattagtctctgcagttgcgcgtggaggatac 270  Q
    ||||||||||||||||||||||||||| |||||||||    
T  14854721 cgagggattagtctctgcagttgcgcgcggaggatac 14854757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 31307185 - 31307131
Alignment:
Q  148 taaccaaggtcttgagtttgaatccagtcttggacacgcagcagtgttaaaactc 202  Q
    ||||||||||| || ||| |||||||| ||||| || ||||||||||||||||||    
T  31307185 taaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactc 31307131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 38766111 - 38766165
Alignment:
Q  148 taaccaaggtcttgagtttgaatccagtcttggacacgcagcagtgttaaaactc 202  Q
    ||||||||||| || |||||||||||| ||||| || ||||||| ||||||||||    
T  38766111 taaccaaggtcctgggtttgaatccagccttgggcatgcagcagcgttaaaactc 38766165  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 9012386 - 9012422
Alignment:
Q  234 cgagggattagtctctgcagttgcgcgtggaggatac 270  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  9012386 cgagggattagtctccgcagttgcgcgcggaggatac 9012422  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 31307091 - 31307055
Alignment:
Q  234 cgagggattagtctctgcagttgcgcgtggaggatac 270  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  31307091 cgagggattagtctccgcagttgcgcgcggaggatac 31307055  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 38766205 - 38766241
Alignment:
Q  234 cgagggattagtctctgcagttgcgcgtggaggatac 270  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  38766205 cgagggattagtctccgcagttgcgcgcggaggatac 38766241  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 25423860 - 25423896
Alignment:
Q  234 cgagggattagtctctgcagttgcgcgtggaggatac 270  Q
    ||||||||||||||| |||||||||||||||||||||    
T  25423860 cgagggattagtctcagcagttgcgcgtggaggatac 25423896  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 13154031 - 13153988
Alignment:
Q  159 ttgagtttgaatccagtcttggacacgcagcagtgttaaaactc 202  Q
    |||||||||||| |||||||||||||||||||  ||||||||||    
T  13154031 ttgagtttgaatacagtcttggacacgcagcaacgttaaaactc 13153988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 42745235 - 42745181
Alignment:
Q  148 taaccaaggtcttgagtttgaatccagtcttggacacgcagcagtgttaaaactc 202  Q
    |||||||||||||| ||| |||||||| ||||| || |||||| |||||||||||    
T  42745235 taaccaaggtcttgggttcgaatccagccttgggcatgcagcaatgttaaaactc 42745181  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 44732692 - 44732638
Alignment:
Q  148 taaccaaggtcttgagtttgaatccagtcttggacacgcagcagtgttaaaactc 202  Q
    ||||||||||| || ||| |||||||| ||||| || ||||||||||||||||||    
T  44732692 taaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactc 44732638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 42745141 - 42745105
Alignment:
Q  234 cgagggattagtctctgcagttgcgcgtggaggatac 270  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  42745141 cgagggattagtctcagcagttgcgcgcggaggatac 42745105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 18428167 - 18428131
Alignment:
Q  234 cgagggattagtctctgcagttgcgcgtggaggatac 270  Q
    ||||||||||||||||||||||||||| |||||||||    
T  18428167 cgagggattagtctctgcagttgcgcgcggaggatac 18428131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 9781150 - 9781054
Alignment:
Q  114 ttataccgaagagcgtttagatgagatggaacgg--------taaccaaggtcttgagtttgaatccagtcttggacacgcagcagtgttaaaactc 202  Q
    ||||||| ||||||||||||||||||| ||||||        |||  ||||||||||||| |||||||| ||||| || ||||||| ||||||||||    
T  9781150 ttatacccaagagcgtttagatgagatagaacggatctcttttaattaaggtcttgagttcgaatccagccttgggcatgcagcagcgttaaaactc 9781054  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 45806258 - 45806312
Alignment:
Q  148 taaccaaggtcttgagtttgaatccagtcttggacacgcagcagtgttaaaactc 202  Q
    ||||||||||| |||||| |||| ||||||||| || |||||||| |||||||||    
T  45806258 taaccaaggtcctgagttcgaattcagtcttgggcatgcagcagttttaaaactc 45806312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 16756198 - 16756234
Alignment:
Q  234 cgagggattagtctctgcagttgcgcgtggaggatac 270  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  16756198 cgagggattagtctccgcagttgcgcgcggaggatac 16756234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 22022236 - 22022272
Alignment:
Q  234 cgagggattagtctctgcagttgcgcgtggaggatac 270  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  22022236 cgagggattagtctccgcagttgcacgtggaggatac 22022272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 36806727 - 36806763
Alignment:
Q  234 cgagggattagtctctgcagttgcgcgtggaggatac 270  Q
    |||||||||||||||||||||||| || |||||||||    
T  36806727 cgagggattagtctctgcagttgcacgcggaggatac 36806763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 42297467 - 42297431
Alignment:
Q  234 cgagggattagtctctgcagttgcgcgtggaggatac 270  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  42297467 cgagggattagtctccgcagttgcgcgcggaggatac 42297431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 45806357 - 45806389
Alignment:
Q  239 gattagtctctgcagttgcgcgtggaggataca 271  Q
    ||||||||||||||||| |||||||||||||||    
T  45806357 gattagtctctgcagttacgcgtggaggataca 45806389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 26353 - 26407
Alignment:
Q  148 taaccaaggtcttgagtttgaatccagtcttggacacgcagcagtgttaaaactc 202  Q
    ||||||||||| || ||| |||||||| ||||| || ||||||||||||||||||    
T  26353 taaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactc 26407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 2743955 - 2744009
Alignment:
Q  148 taaccaaggtcttgagtttgaatccagtcttggacacgcagcagtgttaaaactc 202  Q
    ||||||||||| || ||| |||||||| ||||| || ||||||||||||||||||    
T  2743955 taaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactc 2744009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 36994619 - 36994565
Alignment:
Q  148 taaccaaggtcttgagtttgaatccagtcttggacacgcagcagtgttaaaactc 202  Q
    ||||||||||| || ||| |||||||| |||||||| ||||||| ||||||||||    
T  36994619 taaccaaggtcctgggttcgaatccagccttggacatgcagcagcgttaaaactc 36994565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 2744049 - 2744085
Alignment:
Q  234 cgagggattagtctctgcagttgcgcgtggaggatac 270  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  2744049 cgagggattagtctccgcagttgcgcgcggaggatac 2744085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 4125049 - 4125013
Alignment:
Q  234 cgagggattagtctctgcagttgcgcgtggaggatac 270  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  4125049 cgagggattagtctccgcagttgcgcgcggaggatac 4125013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 7839278 - 7839242
Alignment:
Q  234 cgagggattagtctctgcagttgcgcgtggaggatac 270  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  7839278 cgagggattagtctccgcagttgcgcgcggaggatac 7839242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 12411170 - 12411224
Alignment:
Q  148 taaccaaggtcttgagtttgaatccagtcttggacacgcagcagtgttaaaactc 202  Q
    ||||||||||| |||||| |||||||| ||||| || ||||||| ||||||||||    
T  12411170 taaccaaggtcctgagttcgaatccagccttgggcatgcagcagcgttaaaactc 12411224  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 25084064 - 25084110
Alignment:
Q  156 gtcttgagtttgaatccagtcttggacacgcagcagtgttaaaactc 202  Q
    |||||||||| |||| |||||||||||| |||||| |||||||||||    
T  25084064 gtcttgagttcgaattcagtcttggacatgcagcaatgttaaaactc 25084110  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 39950235 - 39950285
Alignment:
Q  149 aaccaaggtcttgagtttgaatccagtcttggacacgcagcagtgttaaaa 199  Q
    ||||||||||||| ||| ||||||||| ||||||| ||||||| |||||||    
T  39950235 aaccaaggtcttgggttagaatccagttttggacatgcagcagcgttaaaa 39950285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 8757460 - 8757496
Alignment:
Q  234 cgagggattagtctctgcagttgcgcgtggaggatac 270  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  8757460 cgagggattagtctccgcagttgcgcgcggaggatac 8757496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 40318474 - 40318438
Alignment:
Q  234 cgagggattagtctctgcagttgcgcgtggaggatac 270  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  40318474 cgagggattagtctccgcagttgcgcgcggaggatac 40318438  T

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