View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_high_56 (Length: 309)
Name: NF18071_high_56
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_high_56 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 40879850 - 40879590
Alignment:
| Q |
16 |
agaaagaaagtaacacaatccaaatggacccttaggaagatccataaaaaagcaaaa-cacaatttgtacaacataacatgtttgtaacaaagnnnnnnn |
114 |
Q |
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| T |
40879850 |
agaaagaaagtaacacaatccaaatggacccttaggaagatccataaaaaagcaaaaacacaatttgtacaacataacatgtttgtaacaaagaaaaaaa |
40879751 |
T |
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| Q |
115 |
gagatcgtacctctgcacttgatgacctgaacagtagtgttggacatggttaattaacaaaagatgataatgagtgagttgtgtgtggaaccaactactg |
214 |
Q |
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| T |
40879750 |
gagatggtacctctgcacttgatgacctgaacagtagtgttggacatggttaattaacaaaagatgataacgagtgagttgtgtgtggaaccaactactg |
40879651 |
T |
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| Q |
215 |
tcagtgacctttatttatagttatagtagtgaaataaacgaatgattttcaaaacatagtatttaat |
281 |
Q |
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| T |
40879650 |
tcagtgacctttattta------tagtagtgaaaaaaccgaatgattttcaaaacatagtatttaat |
40879590 |
T |
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