View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_high_58 (Length: 301)
Name: NF18071_high_58
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_high_58 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 283
Target Start/End: Original strand, 11968424 - 11968695
Alignment:
| Q |
14 |
tagcatagggattgatcgatggggaaattatttgtatacaacatgtgaattaatggaatgttggagatgaattct--caaaggctatggaaaataataag |
111 |
Q |
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| T |
11968424 |
tagcatagggattgatcgatggggaaattatttgtatacaacatgtaaatcaatggaatgttggagatgaattcttacaaaggctatggaaaataataag |
11968523 |
T |
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| Q |
112 |
agaacattgtgatagggaatgatgtgtgatagatataagagaggcagtatatcgtacacatgatagcgagagactggcaagggcaccgttttgagagtca |
211 |
Q |
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| T |
11968524 |
agaacattgtgataaggaatgatgtgtgatagatataagagaggcagtatatcgtacacatgatagtgagagaccggcaaggacaccgttttgagagtca |
11968623 |
T |
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| Q |
212 |
gagaaataaacaactaggatatattacatgtgatagaatgaaatagctaattagtagaactttgctccaact |
283 |
Q |
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| T |
11968624 |
gagaaataaacaactaggagattttacatgtgatagaatgaaatagctaattagtagaactttgctccaact |
11968695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 40458571 - 40458482
Alignment:
| Q |
36 |
ggaaattatttgtatacaacatgtgaattaatggaatgttggagatgaattctcaaaggctatggaaaataataagagaacattgtgata |
125 |
Q |
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| T |
40458571 |
ggaaaatatttgtatacaacatgtgaaccaatggaatgatgaagatgtatgctcgaagactatgagaaataataagagaacattgtgata |
40458482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 43408341 - 43408430
Alignment:
| Q |
36 |
ggaaattatttgtatacaacatgtgaattaatggaatgttggagatgaattctcaaaggctatggaaaataataagagaacattgtgata |
125 |
Q |
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| T |
43408341 |
ggaaaatatttgtatacaacatgtgaaccaatggaatgatgaagatgtatgctcgaagactatgagaaataataagagaacattgtgata |
43408430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 37667732 - 37667821
Alignment:
| Q |
36 |
ggaaattatttgtatacaacatgtgaattaatggaatgttggagatgaattctcaaaggctatggaaaataataagagaacattgtgata |
125 |
Q |
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| T |
37667732 |
ggaaaatatttttctacaacatgtgaaccaatggaatgatgaagatgtatgctcgaagactatagaaaataataggagaacattgtgata |
37667821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 22403404 - 22403321
Alignment:
| Q |
42 |
tatttgtatacaacatgtgaattaatggaatgttggagatgaattctcaaaggctatggaaaataataagagaacattgtgata |
125 |
Q |
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| T |
22403404 |
tatttgtatacaacatgtgaatcaatggaatgttggagatgtatgctcaaagaccataagaaataataagagaactttttgata |
22403321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 42 - 134
Target Start/End: Complemental strand, 194501 - 194411
Alignment:
| Q |
42 |
tatttgtatacaacatgtgaattaatggaatgttggagatgaattctcaaaggctatggaaaataataagagaacattgtgatagggaatgat |
134 |
Q |
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| T |
194501 |
tatttgtatacaacatatgaatcaatggaacgttggagatgtatgctcaaagac--tgggaaataataagagagcattgtgatatgggatgat |
194411 |
T |
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