View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18071_high_59 (Length: 300)

Name: NF18071_high_59
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18071_high_59
NF18071_high_59
[»] chr5 (2 HSPs)
chr5 (4-292)||(39184736-39185024)
chr5 (150-287)||(8730292-8730427)
[»] chr1 (4 HSPs)
chr1 (139-288)||(42373538-42373686)
chr1 (7-288)||(17032737-17033026)
chr1 (135-290)||(19597952-19598108)
chr1 (137-205)||(41919898-41919966)
[»] chr4 (2 HSPs)
chr4 (131-248)||(16501182-16501300)
chr4 (137-205)||(30963879-30963947)
[»] chr2 (4 HSPs)
chr2 (130-256)||(31902910-31903036)
chr2 (101-256)||(39339357-39339512)
chr2 (150-287)||(25505480-25505615)
chr2 (145-258)||(22886011-22886124)
[»] chr8 (4 HSPs)
chr8 (132-284)||(9519052-9519205)
chr8 (137-199)||(34866640-34866702)
chr8 (145-224)||(10551752-10551832)
chr8 (137-205)||(34389590-34389658)
[»] chr7 (6 HSPs)
chr7 (137-288)||(37792747-37792899)
chr7 (137-199)||(38484991-38485053)
chr7 (101-256)||(47326396-47326551)
chr7 (130-199)||(3420242-3420311)
chr7 (145-248)||(12480298-12480402)
chr7 (137-205)||(38305676-38305744)
[»] chr3 (4 HSPs)
chr3 (173-269)||(25595121-25595217)
chr3 (135-256)||(17501759-17501880)
chr3 (145-288)||(5555991-5556136)
chr3 (148-246)||(1653452-1653550)
[»] chr6 (1 HSPs)
chr6 (137-248)||(12793553-12793664)


Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 4 - 292
Target Start/End: Complemental strand, 39185024 - 39184736
Alignment:
Q  4 ggtactggttttggtgattttgttgctgagatcggcttcgattgggtcagttccgcaggttaatggggttggttgtttactccggcgacatacgttttct 103  Q
    ||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  39185024 ggtactggttttggtgattttgttgctgagatcagcttccattcggtcagttccgcaggttcatggggttggttgtttactccggcgacatatgttttct 39184925  T
Q  104 ccatgtcaccggcagctgcatttctctgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatag 203  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  39184924 ccatgtcaccggcagctgcatttctctgatttaggttgtgattctgcttcaaactggcgtcgttgcctatgttttgtagttgtgtttcgtcttcctatat 39184825  T
Q  204 atatgttttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcgttggcttgtgggtatattcttcg 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39184824 atatgttttgtgttgctgtctgttttcttggtgaggcggtttggcggcgtagttttggctctatcgttggcttgtgggtatattcttcg 39184736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 150 - 287
Target Start/End: Original strand, 8730292 - 8730427
Alignment:
Q  150 cttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttttgtgttgctgtctgttttcttggtgaggcggtttggca 249  Q
    ||||| |||||||||| ||||| |||||||| |||  | ||||||||||| | ||| | |||| |||||||| |||||||| || |||| | ||||||||    
T  8730292 cttcagactggcgtcgctgcccgtgttttgttgtttggcttcgtcttcctctggatctatttt-tgttgctgcctgttttcatg-tgagacagtttggca 8730389  T
Q  250 gcgtagttttggctctatcgttggcttgtgggtatatt 287  Q
    | |||||| || |||||||||||| | |||||||||||    
T  8730390 gtgtagttctgtctctatcgttggttggtgggtatatt 8730427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 139 - 288
Target Start/End: Original strand, 42373538 - 42373686
Alignment:
Q  139 ttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttttgtgttgctgtctgttttcttggtgag 238  Q
    ||||||||||||||||||| || |||||||||| ||||||| ||||||||||||||||||||| ||| |||| | |||| ||| ||||||||||||||||    
T  42373538 ttgtgattccgcttcaaaccggtgtcgttgcccgtgttttgaagttgtgtttcgtcttcctatcgatctgttctatgttactgcctgttttcttggtgag 42373637  T
Q  239 gcggtttggcagcgtagttttggctctatcgttggcttgtgggtatattc 288  Q
    | |||||| | ||||||||||| ||||||| |||| ||||||||||||||    
T  42373638 gtggtttgacggcgtagttttgtctctatctttgg-ttgtgggtatattc 42373686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 7 - 288
Target Start/End: Original strand, 17032737 - 17033026
Alignment:
Q  7 actggttttggtgattttgttgctgagatcggcttcgattgggtcagttccgcaggttaatggggttggtt---gtttactccggcgacatacgttttct 103  Q
    ||||||||||||  | ||||||||||||| ||| ||||||  |||||||  ||||||| ||||  ||||||   |||||||||| ||||  | || | ||    
T  17032737 actggttttggttgtgttgttgctgagattggcgtcgattcagtcagttttgcaggttcatggacttggtttttgtttactccgacgacggaagtctcct 17032836  T
Q  104 ccatgtcaccggcagctgcatttctctgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgtttt-gtagttgtgtttcgtcttcctata 202  Q
    || |||||||||| ||  ||||| | ||||   ||||||||||| |||||| || || |||  | ||  |||||| || ||||  |||||||||||| ||    
T  17032837 ccttgtcaccggcggccacatttttttgatcagggttgtgattctgcttcacaccggggtcactacctgtgtttttgttgttggatttcgtcttcctcta 17032936  T
Q  203 gatatgtt---ttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtag-ttttggctctatcgttggcttgtgggtatattc 288  Q
    |||||||    || ||||||||  ||||||||||||||| ||||||||||| |||| ||||| |||||||| ||  |||||||| |||||    
T  17032937 gatatgtgatattatgttgctgcttgttttcttggtgagacggtttggcagtgtagtttttgtctctatcgctgatttgtgggtttattc 17033026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 290
Target Start/End: Original strand, 19597952 - 19598108
Alignment:
Q  135 taggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttttcttg 233  Q
    ||||||||| |||| ||||| || ||||||||||||| |||| ||| |||| ||||| ||||||| | | | ||| |||| ||||||| ||| |||||||    
T  19597952 taggttgtgtttccacttcagaccggcgtcgttgcccgtgttctgttgttgggtttcatcttccttttggtttgtgtttgggttgctgcctg-tttcttg 19598050  T
Q  234 gtgaggcggtttggcagcgtag-ttttggctctatcgttggcttgtgggtatattctt 290  Q
    | |||| |||||||  ||||||  |||| |||| ||| ||| ||||| ||||||||||    
T  19598051 gcgaggtggtttggaggcgtagcctttgtctctttcgatggtttgtgagtatattctt 19598108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 41919898 - 41919966
Alignment:
Q  137 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 205  Q
    ||||||| |||||||||||||  |||||||||||| |||||||| || |  |||| ||||||| |||||    
T  41919898 ggttgtggttccgcttcaaaccagcgtcgttgcccgtgttttgttgtgggatttcatcttcctctagat 41919966  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 248
Target Start/End: Original strand, 16501182 - 16501300
Alignment:
Q  131 gatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgtttt 229  Q
    ||||| |||||||||||| |||||||| ||||||| |||||||||| ||| ||||  ||| |||||||| || || ||| ||||||| || |||||||||    
T  16501182 gatttgggttgtgattccacttcaaaccggcgtcgctgcccatgttgtgttgttggttttagtcttcctctaaatttgtgtttgtgtggccgtctgtttt 16501281  T
Q  230 cttggtgaggcggtttggc 248  Q
    |||||||||||||||||||    
T  16501282 cttggtgaggcggtttggc 16501300  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 30963879 - 30963947
Alignment:
Q  137 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 205  Q
    ||||||| |||| |||||||| ||||||| ||||| |||||||| ||||  |||||||||||| |||||    
T  30963879 ggttgtggttccacttcaaaccggcgtcgatgcccgtgttttgtggttggatttcgtcttcctctagat 30963947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 256
Target Start/End: Complemental strand, 31903036 - 31902910
Alignment:
Q  130 tgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttt 228  Q
    |||| ||||||||| ||||||||||||| ||||||| ||||| |||||||| |||| ||||||||||||| ||||| | | || |||||||||| || ||    
T  31903036 tgatctaggttgtgtttccgcttcaaaccggcgtcgctgcccgtgttttgttgttgggtttcgtcttcctctagatctatgttagtgttgctgtttg-tt 31902938  T
Q  229 tcttggtgaggcggtttggcagcgtagt 256  Q
    ||||| ||||||  |||||| |||||||    
T  31902937 tcttgctgaggctatttggcggcgtagt 31902910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 256
Target Start/End: Complemental strand, 39339512 - 39339357
Alignment:
Q  101 tctccatgtcaccggcagctgcatttctctgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttccta 200  Q
    ||||| |||||||||| || || ||||| |||||| ||||||| || | |||||||| | ||||| ||| | |||||||| ||||  |||| |||||||     
T  39339512 tctccttgtcaccggcggccgcctttctatgattttggttgtgttttcacttcaaaccgacgtcgctgctcgtgttttgttgttggatttcctcttcctc 39339413  T
Q  201 tagatatgt-tttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagt 256  Q
    ||||| | | |||||||||||||||| |||||||||||||  ||||||| |||||||    
T  39339412 tagatctatatttgtgttgctgtctg-tttcttggtgaggatgtttggcggcgtagt 39339357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 150 - 287
Target Start/End: Complemental strand, 25505615 - 25505480
Alignment:
Q  150 cttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttttgtgttgctgtctgttttcttggtgaggcggtttggca 249  Q
    ||||| |||||||||| ||||| |||||||| |||  | ||||||||||| | ||| | |||| |||||||| |||||||| || |||| | ||||||||    
T  25505615 cttcagactggcgtcgctgcccgtgttttgttgtttggcttcgtcttcctctggatctatttt-tgttgctgcctgttttcatg-tgagacagtttggca 25505518  T
Q  250 gcgtagttttggctctatcgttggcttgtgggtatatt 287  Q
    | |||||| || |||||||||||| | |||||||||||    
T  25505517 gtgtagttctgtctctatcgttggttggtgggtatatt 25505480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 258
Target Start/End: Complemental strand, 22886124 - 22886011
Alignment:
Q  145 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttt-tgtgttgctgtctgttttcttggtgaggcggt 243  Q
    |||||||||| |||||||||| |  || |||||||| |||| ||||| ||||||| | |||||||   ||||||||||  ||||| |||||||||| |||    
T  22886124 ttccgcttcagactggcgtcgctatccgtgttttgttgttgggtttcatcttcctcttgatatgtaactgtgttgctgcttgttt-cttggtgaggtggt 22886026  T
Q  244 ttggcagcgtagttt 258  Q
    ||||| |||| ||||    
T  22886025 ttggcggcgtggttt 22886011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 284
Target Start/End: Original strand, 9519052 - 9519205
Alignment:
Q  132 atttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttttc 230  Q
    |||| ||||||| | |||||||||||  |||||| ||||| |||||||| |||| |||||||||| || ||||| ||| ||||| ||||||| |||||||    
T  9519052 atttgggttgtgttcccgcttcaaaccagcgtcgctgcccgtgttttgttgttgggtttcgtctttctctagatttgtgtttgtattgctgt-tgttttc 9519150  T
Q  231 ttggtgaggcggtttggcagcgtag-ttttggctctatcgttggcttgtgggtat 284  Q
     |||||||| || ||||| | |||| ||||| | |||||| ||| ||||||||||    
T  9519151 atggtgaggtgggttggcggtgtagtttttgtccctatcgctggtttgtgggtat 9519205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 34866702 - 34866640
Alignment:
Q  137 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct 199  Q
    ||||||| ||||||||||||| ||||||| ||||| |||||||| ||||  ||||||||||||    
T  34866702 ggttgtggttccgcttcaaaccggcgtcgctgcccgtgttttgttgttggatttcgtcttcct 34866640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 10551752 - 10551832
Alignment:
Q  145 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtct 224  Q
    ||||||||||||  ||||||| ||||| || ||||| |||| ||||||||||||| ||||| | | |||||||||||||||    
T  10551752 ttccgcttcaaatcggcgtcgctgcccgtgctttgttgttgggtttcgtcttcctctagatctatgtttgtgttgctgtct 10551832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 34389658 - 34389590
Alignment:
Q  137 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 205  Q
    ||||||| ||||||||||||| ||||||| ||||| |||||||| || |  ||||||| |||| |||||    
T  34389658 ggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgtggaatttcgtcctcctctagat 34389590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 137 - 288
Target Start/End: Original strand, 37792747 - 37792899
Alignment:
Q  137 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttttcttggt 235  Q
    ||||||| ||||||||||||| |||||||||| || |||||||  |||| ||||| |||| || | |||  || |||||||||||||||| |||||||||    
T  37792747 ggttgtgtttccgcttcaaaccggcgtcgttgtccgtgttttgctgttgggtttcatctttctcttgatccgtgtttgtgttgctgtctg-tttcttggt 37792845  T
Q  236 gaggcggtttggcagcgtagttt-tggctctatcgttggcttgtgggtatattc 288  Q
      |  |||||||| ||||||||| || |||| ||||||| |||||||| |||||    
T  37792846 tggctggtttggcggcgtagtttctgtctctgtcgttggtttgtgggtttattc 37792899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 38484991 - 38485053
Alignment:
Q  137 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct 199  Q
    ||||||| ||||||||||||| ||||||| |||||||||||||| ||   |||||||||||||    
T  38484991 ggttgtgtttccgcttcaaaccggcgtcgctgcccatgttttgttgtcaggtttcgtcttcct 38485053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 256
Target Start/End: Complemental strand, 47326551 - 47326396
Alignment:
Q  101 tctccatgtcaccggcagctgcatttctctgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttccta 200  Q
    ||||| |||||||||| || || ||||| |||||| ||||||| || | |||||||  || |||| ||||| |||||||| ||||  |||| |||||||     
T  47326551 tctccttgtcaccggcggccgcctttctatgatttcggttgtgttttcacttcaaatcggtgtcgctgcccgtgttttgttgttggatttcctcttcctc 47326452  T
Q  201 tagatatgt-tttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagt 256  Q
    |||||   | ||||||||||||  ||||| ||||||||||  ||||||| |||||||    
T  47326451 tagatcaatatttgtgttgctgcttgttt-cttggtgaggatgtttggcggcgtagt 47326396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 3420311 - 3420242
Alignment:
Q  130 tgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct 199  Q
    |||| ||||||||| ||||||||| ||| ||||||| ||| | |||||||| |||  |||||||||||||    
T  3420311 tgatctaggttgtggttccgcttcgaaccggcgtcgctgctcgtgttttgttgtttggtttcgtcttcct 3420242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 248
Target Start/End: Original strand, 12480298 - 12480402
Alignment:
Q  145 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttc-gtcttcctatagatatgt-tttgtgttgctgtctgttttcttggtgaggcgg 242  Q
    |||| |||||||| ||||||| ||| | |||||||| ||||  |||| |||||||| | ||| ||| ||||||| ||  |||||||||||||||||||||    
T  12480298 ttccacttcaaaccggcgtcgctgctcgtgttttgttgttggttttcagtcttcctct-gatctgtatttgtgtggccatctgttttcttggtgaggcgg 12480396  T
Q  243 tttggc 248  Q
    ||||||    
T  12480397 tttggc 12480402  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 38305676 - 38305744
Alignment:
Q  137 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 205  Q
    ||||||| ||||||||||||| ||||| | ||||  |||||||| ||||  |||||||||||| |||||    
T  38305676 ggttgtggttccgcttcaaaccggcgttgctgcctgtgttttgttgttggatttcgtcttcctctagat 38305744  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 173 - 269
Target Start/End: Complemental strand, 25595217 - 25595121
Alignment:
Q  173 tgttttgtagttgtgtttcgtcttcctatagatatgtttt-gtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcg 269  Q
    |||||||| ||| ||||||||| |||| ||||| |||||| |||||||||  ||||| |||||||||||||||||||| |||||||| | ||||||||    
T  25595217 tgttttgttgttatgtttcgtcatcctctagatttgtttttgtgttgctgcttgttt-cttggtgaggcggtttggcaacgtagtttcgtctctatcg 25595121  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 256
Target Start/End: Complemental strand, 17501880 - 17501759
Alignment:
Q  135 taggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttttcttg 233  Q
    ||||||||| ||||||||||||||| |||| ||| || |||||||| |||   |||||||||||| ||||| | | |||||||||||  || |||| |||    
T  17501880 taggttgtgtttccgcttcaaactgacgtcattgtccgtgttttgttgttagatttcgtcttcctctagatctatatttgtgttgcttcctatttt-ttg 17501782  T
Q  234 gtgaggcggtttggcagcgtagt 256  Q
    ||||||  |||||||||||||||    
T  17501781 gtgaggatgtttggcagcgtagt 17501759  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 288
Target Start/End: Original strand, 5555991 - 5556136
Alignment:
Q  145 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttccta-tagatatgt-tttgtgttgctgtctgttttcttggtgaggcgg 242  Q
    |||||||||| || ||||||| ||||| |||| | | |||| | |||||||||  | ||||||||| ||||||||||||  ||||||| ||||| |||||    
T  5555991 ttccgcttcagaccggcgtcgctgcccgtgttcttttgttgggcttcgtcttcaaaatagatatgtgtttgtgttgctgcttgttttcatggtgtggcgg 5556090  T
Q  243 tttggcagcgtagttttggctctatcgttggcttgtgggtatattc 288  Q
    || ||| || | |||||| |||| ||| ||| ||||||||||||||    
T  5556091 ttaggctgcattgttttgtctctgtcgctggtttgtgggtatattc 5556136  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 246
Target Start/End: Complemental strand, 1653550 - 1653452
Alignment:
Q  148 cgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct--atagatatgttttgtgttgctgtctgttttcttggtgaggcggttt 245  Q
    |||||||||| ||||||| ||||| |||||||| ||||  ||||||||||||  |||  |||| |||||||||||| ||| |||||| |||||| |||||    
T  1653550 cgcttcaaaccggcgtcgatgcccgtgttttgttgttggatttcgtcttcctccatatttatg-tttgtgttgctgcctg-tttcttcgtgaggaggttt 1653453  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 248
Target Start/End: Original strand, 12793553 - 12793664
Alignment:
Q  137 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatat-gttttgtgttgctgtctgttttcttggt 235  Q
    ||||||| || |||||||||||||||||||||||| |||||||  | ||  |||||||||||| | ||| |   |||||||||||||||| |||||||||    
T  12793553 ggttgtgttttcgcttcaaactggcgtcgttgcccgtgttttggtgatggatttcgtcttcctctggatctaaatttgtgttgctgtctg-tttcttggt 12793651  T
Q  236 gaggcggtttggc 248  Q
    ||||  |||||||    
T  12793652 gagggtgtttggc 12793664  T

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