View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18071_high_6 (Length: 604)

Name: NF18071_high_6
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18071_high_6
NF18071_high_6
[»] chr7 (12 HSPs)
chr7 (23-392)||(8361502-8361868)
chr7 (347-588)||(8354912-8355159)
chr7 (10-187)||(8411440-8411619)
chr7 (104-241)||(8415057-8415197)
chr7 (291-416)||(8410745-8410870)
chr7 (449-551)||(8410644-8410742)
chr7 (500-588)||(8348876-8348966)
chr7 (173-255)||(8350224-8350306)
chr7 (173-255)||(8480807-8480889)
chr7 (307-437)||(8349004-8349134)
chr7 (304-358)||(8414996-8415050)
chr7 (10-64)||(8405844-8405898)
[»] chr4 (1 HSPs)
chr4 (309-507)||(51650242-51650442)


Alignment Details
Target: chr7 (Bit Score: 180; Significance: 7e-97; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 23 - 392
Target Start/End: Complemental strand, 8361868 - 8361502
Alignment:
Q  23 ttgttttgaaaatgtaatttggtgttcaacactcgcttggttcatatgcgttgcaaataatatgggtggaaattgctaacaaggtgtttgtttgaaacaa 122  Q
    ||||||||||||||||||||| ||| ||||||| | |||||| |||||| ||||| |||   ||||||||||||||| || |||||||| ||||||||||    
T  8361868 ttgttttgaaaatgtaatttgatgtgcaacacttgtttggttgatatgcattgcagata---tgggtggaaattgctcaccaggtgtttttttgaaacaa 8361772  T
Q  123 tgtcttagagagagaga----tgtgaattgaataatcannnnnnn-cctgtttgaatttttggcataatatatcagctctgaacctattttgatttaatt 217  Q
    |||||||||||||||||    |||||||||||||||||        |||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  8361771 tgtcttagagagagagagaaatgtgaattgaataatcattttttttcctgtttgaatttttggcataatatatctgctctgaacctattttgattcaatt 8361672  T
Q  218 gtcatgaaggctgaaacaatcactgtttttattgtcattttatagctagggataaggcttagtctaggagtatatatatagtgctgatcgcaactttgtg 317  Q
     |||| | |||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  8361671 ttcattatggctaaaacaatcactgattttattgtcatttcatagctagggataaggcttagtctaggagtatatatataatgctgatcgcaaccttgtg 8361572  T
Q  318 cttgggttg--tgttttgaaccaactacttcatctttccattgccctactctaaacaagacacttgggaatggtgtg 392  Q
    |||||||||  | |||||||||       |||||||||||||| |||||||| |||||| || ||||||||||||||    
T  8361571 cttgggttgttttttttgaacc-------tcatctttccattgtcctactctcaacaagtcaattgggaatggtgtg 8361502  T

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Target: chr7; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 347 - 588
Target Start/End: Complemental strand, 8355159 - 8354912
Alignment:
Q  347 atctttccattgccctactctaaacaagacacttgggaatggtgtgaaattcctcaatcaccacctttcttccgaactctaccatgacaagga------g 440  Q
    |||||||||||  |||||||| || |||||| ||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||      |    
T  8355159 atctttccattttcctactctcaagaagacaattgggaatgatgtgaaattcctcaatcgccacctttcttccgaactcttccatgacaaggaaggagag 8355060  T
Q  441 tttacatacacttcttgaattccgaggaattcacaattacaagggaaaagtatctatctatttcttggctacgatatagctttgctagttttggctggtt 540  Q
    ||||||| |||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||||||||||||    
T  8355059 tttacatccacttctcaatttccgaggaattcacaattacaagggaaaagtatctatctatttcttggctactcaatagttttgctagttttggctggtt 8354960  T
Q  541 tttacttattattgcctactacacattctcttaactaagctatagttt 588  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8354959 tttacttattattgcttactacacattctcttaactaagctatagttt 8354912  T

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Target: chr7; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 10 - 187
Target Start/End: Complemental strand, 8411619 - 8411440
Alignment:
Q  10 gaagaatatgatgttgttttgaaaatgtaatttggtgttcaacactcgcttggttcatatgcgttgcaaataatatgggtggaaattgctaacaaggtgt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8411619 gaagaatatgatgttgttttgaaaatgtaatttggtgttcaacactcccttggttcatatgcgttgcaaataatatgggtggaaattgctaacaaggtgt 8411520  T
Q  110 ttgtttgaaacaatgtcttagagaga--gagatgtgaattgaataatcannnnnnncctgtttgaatttttggcataata 187  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||       ||||||||||||||||||||||||    
T  8411519 ttgtttgaaacaatgtcttagagagagagagatgtgaattgaataatcatgtttttcctgtttgaatttttggcataata 8411440  T

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Target: chr7; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 104 - 241
Target Start/End: Complemental strand, 8415197 - 8415057
Alignment:
Q  104 aggtgtttgtttgaaacaatgtcttagagagagagatgtgaattgaataatcannnnnnncctgtttgaatttttggc---ataatatatcagctctgaa 200  Q
    |||||||||||||||||||||||||| |||||||||| ||||||| |||||||       ||||||||||||| ||||   |||||||||| ||||||||    
T  8415197 aggtgtttgtttgaaacaatgtcttaaagagagagatatgaattgcataatcatgtttttcctgtttgaatttatggcataataatatatctgctctgaa 8415098  T
Q  201 cctattttgatttaattgtcatgaaggctgaaacaatcact 241  Q
    ||||||| ||||  ||| |||||| ||||||||||||||||    
T  8415097 cctatttagattcgattttcatgatggctgaaacaatcact 8415057  T

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Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 291 - 416
Target Start/End: Complemental strand, 8410870 - 8410745
Alignment:
Q  291 atatatagtgctgatcgcaactttgtgcttgggttgtgttttgaaccaactacttcatctttccattgccctactctaaacaagacacttgggaatggtg 390  Q
    |||||| ||||| ||||||| ||| ||||||  |||| ||||||||||  |||| || |||||||||| |||||||| ||| ||||| ||||||||||||    
T  8410870 atatatcgtgctaatcgcaaatttctgcttgaattgttttttgaaccatttactgcacctttccattgtcctactctcaaccagacaattgggaatggtg 8410771  T
Q  391 tgaaattcctcaatcaccacctttct 416  Q
    ||||||||||||||| ||||||||||    
T  8410770 tgaaattcctcaatctccacctttct 8410745  T

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Target: chr7; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 449 - 551
Target Start/End: Complemental strand, 8410742 - 8410644
Alignment:
Q  449 cacttcttgaattccgaggaattcacaattacaagggaaaagtatctatctatttcttggctacgatatagctttgctagttttggctggtttttactta 548  Q
    ||||||| || |||||||||||||||||||||||| |||| ||||||||    |||||||||||  |||| |||||||||||||||||||||||||||||    
T  8410742 cacttctcgagttccgaggaattcacaattacaagagaaaggtatctat----ttcttggctactctataactttgctagttttggctggtttttactta 8410647  T

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Target: chr7; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 500 - 588
Target Start/End: Complemental strand, 8348966 - 8348876
Alignment:
Q  500 atttcttggctacgatatagctttgctagttttggctggtttttacttattattgcctacta--cacattctcttaactaagctatagttt 588  Q
    ||||||||||||   || ||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||| |||||||||||||    
T  8348966 atttcttggctagtctacagctttgctagttttggatggtttttacttattattgcctactacacacattctcttaattaagctatagttt 8348876  T

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Target: chr7; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 8350306 - 8350224
Alignment:
Q  173 atttttggcataatatatcagctctgaacctattttgatttaattgtcatgaaggctgaaacaatcactgtttttattgtcat 255  Q
    |||| |||||||||| ||| ||||||||||||||| ||||||||| ||||||||||||||  ||||||||||||| |||||||    
T  8350306 atttatggcataatagatctgctctgaacctatttagatttaattttcatgaaggctgaattaatcactgtttttgttgtcat 8350224  T

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Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 8480807 - 8480889
Alignment:
Q  173 atttttggcataatatatcagctctgaacctattttgatttaattgtcatgaaggctgaaacaatcactgtttttattgtcat 255  Q
    |||| |||||||||| |||  |||||||||| ||| ||||||||| ||||||||||||||  ||||||||||||| |||||||    
T  8480807 atttatggcataataaatctactctgaacctgtttagatttaattttcatgaaggctgaattaatcactgtttttgttgtcat 8480889  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 437
Target Start/End: Complemental strand, 8349134 - 8349004
Alignment:
Q  307 gcaactttgtgcttgggttgtgttttgaaccaactacttcatctttccattgccctactctaaacaagacacttgggaatggtgtgaaattcctcaatca 406  Q
    |||| |||||| ||| ||||| ||| ||||||  |||| ||||||||| ||| || ||||| |||||  || |||| |||| ||||||||||||||||      
T  8349134 gcaaatttgtggttgagttgtttttagaaccatttactgcatctttccgttgtccaactctcaacaaatcaattggaaatgatgtgaaattcctcaattg 8349035  T
Q  407 ccacctttcttccgaactctaccatgacaag 437  Q
    |||||||||| || || ||| |||| |||||    
T  8349034 ccacctttctaccaaattcttccattacaag 8349004  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 358
Target Start/End: Complemental strand, 8415050 - 8414996
Alignment:
Q  304 atcgcaactttgtgcttgggttgtgttttgaaccaactacttcatctttccattg 358  Q
    |||||||||||||||||| ||||| | ||||||||  ||||||||||||||||||    
T  8415050 atcgcaactttgtgcttgagttgtttcttgaaccatttacttcatctttccattg 8414996  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 8405898 - 8405844
Alignment:
Q  10 gaagaatatgatgttgttttgaaaatgtaatttggtgttcaacactcgcttggtt 64  Q
    |||||||||||||||||||||||||  ||||||| ||| ||||||| | ||||||    
T  8405898 gaagaatatgatgttgttttgaaaaaataatttgttgtgcaacacttgtttggtt 8405844  T

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Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 309 - 507
Target Start/End: Original strand, 51650242 - 51650442
Alignment:
Q  309 aactttgtgcttgggttgtgttttgaaccaactacttcatctttccattgccctactctaaacaagacacttgggaatggtgtgaaattcctcaatcacc 408  Q
    ||||||||||||| ||||   |||||||||  |||| ||||||||| | | |||||||| |||||| || |||| ||||||||| ||||||| |||| ||    
T  51650242 aactttgtgcttgagttggactttgaaccatttactgcatctttccctcgtcctactctcaacaagtcaattggaaatggtgtgcaattccttaatcgcc 51650341  T
Q  409 acctttcttccgaactctaccatgacaag--gagtttacatacacttcttgaattccgaggaattcacaattacaagggaaaagtatctatctatttctt 506  Q
    |||||||| |  |||||| ||||||||||  |||||||||| ||||| | ||||| |   || ||||||  ||||||||||| |||||||||||||||||    
T  51650342 acctttctgctaaactcttccatgacaaggagagtttacatccacttttggaatttctcagacttcacagctacaagggaaaggtatctatctatttctt 51650441  T
Q  507 g 507  Q
    |    
T  51650442 g 51650442  T

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