View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_high_66 (Length: 268)
Name: NF18071_high_66
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_high_66 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 60 - 245
Target Start/End: Original strand, 42675009 - 42675207
Alignment:
| Q |
60 |
cttaataatttttaagaatcatatatttgttcgacacatta-------------aacaataataaataatcatctaataagtataccatatattgatgat |
146 |
Q |
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| T |
42675009 |
cttaataatttttaagaatcatatatttgttagacacattaatataataaattaaacaataataaataatcatctaataagtataccatatattgatgat |
42675108 |
T |
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| Q |
147 |
ataagttatcattcaattaatttatgtttcattttgtcaataaaatcttttatttcaatatgaaacaggttttcaaatattatattttagagagcatga |
245 |
Q |
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| T |
42675109 |
ataagttatcattcaattaatttatgtttcattttgtcaataaaatcttttatttcaatatgaaacaggttttcaaatattatattttagagagcatga |
42675207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 42674615 - 42674660
Alignment:
| Q |
18 |
ataaaagcaatcacaaagacagtgtgcatatcatcctatgaactta |
63 |
Q |
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| T |
42674615 |
ataaaagcaatcacaaagacagtgtgcatatcatcctatgaactta |
42674660 |
T |
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