View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_high_69 (Length: 258)
Name: NF18071_high_69
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_high_69 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 32425387 - 32425658
Alignment:
| Q |
1 |
cttgtaccatcacctagcttctaattataatcactcagtgtaagtggtgtgaataacttcaacgctgtcctgagaataacatgatgtgaattctttccat |
100 |
Q |
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| T |
32425387 |
cttgtaccatcacctagcttctaattacaatcagtcagtgtaagtggtgtgaataacttcaacgctgtactgagaataacatgatgtgaattctttccat |
32425486 |
T |
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| Q |
101 |
agcatataatatttcttgttgtagaaggtacataacatgatgcttggtggacttctttgattccctctcactaggtgagccctt---------------- |
184 |
Q |
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| T |
32425487 |
agcatataatatttcttgttgtagaaggtacataacatgatgcttggtggacttctttgattccctctcacta-gtgagccctttataaatgggcaagca |
32425585 |
T |
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| Q |
185 |
------tatgatcctaagtatcatgaggtgtgggttaggaacaatgctcaccttcaacgcctatgctactcca |
251 |
Q |
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| T |
32425586 |
gttccatatgatcctaagtatcatgaggtgtgggttaggaacaatgctcaccttcaacgcttacgctactcca |
32425658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 32421305 - 32421347
Alignment:
| Q |
185 |
tatgatcctaagtatcatgaggtgtgggttaggaacaatgctc |
227 |
Q |
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| T |
32421305 |
tatgatcccaagtatcatgaggagtgggttaggaacaatgctc |
32421347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 84 - 187
Target Start/End: Original strand, 1543507 - 1543610
Alignment:
| Q |
84 |
atgtgaattctttccatagcatataatatttcttgttgtagaaggtacataacatgatgcttggtggacttctttgattccctctcactaggtgagccct |
183 |
Q |
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| T |
1543507 |
atgtgaagtctttccatagcatataatatttcttgttgtaaaaggtacataacatgatgcttggtggacttgtttgtttccctctcgccaggggagccct |
1543606 |
T |
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| Q |
184 |
ttat |
187 |
Q |
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|||| |
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| T |
1543607 |
ttat |
1543610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 1543630 - 1543672
Alignment:
| Q |
185 |
tatgatcctaagtatcatgaggtgtgggttaggaacaatgctc |
227 |
Q |
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| T |
1543630 |
tatgatcccaagtatcatgaggagtgggttaggaacaatgctc |
1543672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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