View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_high_72 (Length: 250)
Name: NF18071_high_72
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_high_72 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 233
Target Start/End: Original strand, 38013259 - 38013475
Alignment:
| Q |
17 |
cagatgacaaaagaaccctactccaaatcaaaaaagaatttggcaaccctagccaactctcttcatgggatccaaacactgactgctgcaacaataaatg |
116 |
Q |
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| T |
38013259 |
cagatgacaaaagaaccctactccaaatcaaaaaagaatttggcaaccctagccaactctcttcatgggatccaaacacagactgctgcaacaacaaatg |
38013358 |
T |
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| Q |
117 |
gaaaggtgtctcatgcaactcagacacacaaaccaaccgagtagaaaaccttgatctcgagaaccttgacctacctaaacctgttccaattccaccctcc |
216 |
Q |
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| T |
38013359 |
gaaaggtgtctcatgcaactcagacacacaaaccaaccgagtagaaaaccttgatctcgagaaccttgacctacctaaacctgttccaattccaccctcc |
38013458 |
T |
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| Q |
217 |
atcgctaacctcccttt |
233 |
Q |
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| T |
38013459 |
atcgctaacctcccttt |
38013475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 35 - 234
Target Start/End: Complemental strand, 37697804 - 37697614
Alignment:
| Q |
35 |
tactccaaatcaaaaaagaatttggcaaccctagccaactctcttcatgggatcca---aacactgactgctgcaacaataaatggaaaggtgtctcatg |
131 |
Q |
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| T |
37697804 |
tactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggatccaaacaacaatgactgctgcaacgacaaatggaagggtgtctcatg |
37697705 |
T |
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| Q |
132 |
caactcagacacacaaaccaaccgagtagaaaaccttgatctcgagaaccttgacctacctaaacctgttccaattccaccctccatcgctaacctccct |
231 |
Q |
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| T |
37697704 |
cgactcag------------accgagtcgccaaccttggtctcgacgacctcaacctccctaaacctgttccatttccaccctccatcactaacctccct |
37697617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 37989542 - 37989634
Alignment:
| Q |
17 |
cagatgacaaaagaaccctactccaaatcaaaaaagaatttggcaaccctagccaactctcttcatgggatccaaacactgactgctgcaaca |
109 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||| |
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| T |
37989542 |
cagatgacaaaagaaccctactccaaataaagaaagaatttggcaaccctagccaactctcttcatgggatccaaccatcgactgctgtaaca |
37989634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 37993735 - 37993823
Alignment:
| Q |
20 |
atgacaaaagaaccctactccaaatcaaaaaagaatttggcaaccctagccaactctcttcatgggatccaaacactgactgctgcaac |
108 |
Q |
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| T |
37993735 |
atgacaaaaaaaccctctttcaaatcaaaaaacaatttggcaacccaaccaaactctcttcatgggattcaactaccgactgctgcaac |
37993823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 37993874 - 37993927
Alignment:
| Q |
165 |
ccttgatctcgagaaccttgacctacctaaacctgttccaattccaccctccat |
218 |
Q |
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| T |
37993874 |
ccttgatctccaggacctcgaccttcctcaccctgttccaattccaccctccat |
37993927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 18138354 - 18138386
Alignment:
| Q |
22 |
gacaaaagaaccctactccaaatcaaaaaagaa |
54 |
Q |
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| T |
18138354 |
gacaaaagaaccctactccaaatcaagaaagaa |
18138386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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