View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18071_high_80 (Length: 239)

Name: NF18071_high_80
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18071_high_80
NF18071_high_80
[»] chr7 (4 HSPs)
chr7 (14-208)||(5676982-5677176)
chr7 (14-208)||(5702034-5702228)
chr7 (15-134)||(11951506-11951625)
chr7 (145-208)||(11951687-11951750)
[»] scaffold0065 (1 HSPs)
scaffold0065 (17-132)||(62467-62582)
[»] chr1 (4 HSPs)
chr1 (138-206)||(22031451-22031519)
chr1 (44-134)||(19264906-19264997)
chr1 (39-135)||(10152092-10152187)
chr1 (136-208)||(10151968-10152039)
[»] chr3 (2 HSPs)
chr3 (159-208)||(20904189-20904238)
chr3 (23-132)||(20904318-20904428)
[»] chr6 (2 HSPs)
chr6 (61-132)||(13236294-13236364)
chr6 (136-208)||(13236181-13236252)
[»] chr8 (2 HSPs)
chr8 (137-205)||(22451639-22451706)
chr8 (15-127)||(22451474-22451586)
[»] scaffold0589 (1 HSPs)
scaffold0589 (34-133)||(575-673)


Alignment Details
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 5676982 - 5677176
Alignment:
Q  14 aatactcatgacgaagaacgttagaagttgtgagtcttggagaatgacgtggagtctttctcgtcaacttttatcgcatttggaagttcattttgtgtca 113  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  5676982 aatactcatgaggaagaacgttagaagttgtgagtcttggagaatgacgtggagtctttctcatcaacttttatcgcatttggaagtttattttgtgtca 5677081  T
Q  114 atgctctgattctgtaacactaggaattcaatttaatttttaagaatgatgtgactatgtcttaaacttatttcctttgcactatttttaattaa 208  Q
    ||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5677082 atgctctgattctgtaatactgggaattcaatttaatttttaaaaatgatgtgactatgtcttaaacttatttcctttgcactatttttaattaa 5677176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 5702034 - 5702228
Alignment:
Q  14 aatactcatgacgaagaacgttagaagttgtgagtcttggagaatgacgtggagtctttctcgtcaacttttatcgcatttggaagttcattttgtgtca 113  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  5702034 aatactcatgaggaagaacgttagaagttgtgagtcttggagaatgacgtggagtctttctcatcaacttttatcgcatttggaagtttattttgtgtca 5702133  T
Q  114 atgctctgattctgtaacactaggaattcaatttaatttttaagaatgatgtgactatgtcttaaacttatttcctttgcactatttttaattaa 208  Q
    ||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5702134 atgctctgattctgtaatactgggaattcaatttaatttttaaaaatgatgtgactatgtcttaaacttatttcctttgcactatttttaattaa 5702228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 11951506 - 11951625
Alignment:
Q  15 atactcatgacgaagaacgttagaagttgtgagtcttggagaatgacgtggagtctttctcgtcaacttttatcgcatttggaagttcattttgtgtcaa 114  Q
    |||||||  ||||||||| |||||||||||||||||||||||| |  |||||| ||||||||||||||||||||||||||| ||||| | ||||||||||    
T  11951506 atactcaaaacgaagaaccttagaagttgtgagtcttggagaacggtgtggagcctttctcgtcaacttttatcgcatttgaaagtttaatttgtgtcaa 11951605  T
Q  115 tgctctgattctgtaacact 134  Q
    |||||||||| |||||||||    
T  11951606 tgctctgattttgtaacact 11951625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 11951687 - 11951750
Alignment:
Q  145 tttaatttttaagaatgatgtgactatgtcttaaacttatttcctttgcactatttttaattaa 208  Q
    |||||||||||||||| ||| ||||||||||| || ||||||   |||||||||||||||||||    
T  11951687 tttaatttttaagaataatgggactatgtcttgaatttatttttgttgcactatttttaattaa 11951750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 62467 - 62582
Alignment:
Q  17 actcatgacgaagaacgttagaagttgtgagtcttggagaatgacgtggagtctttctcgtcaacttttatcgcatttggaagttcattttgtgtcaatg 116  Q
    ||||||| | |||||| |||||||||||||||||||||||||||||||||  |||||| || |||||||||  ||||||| |||| ||||||||||||||    
T  62467 actcatggcaaagaaccttagaagttgtgagtcttggagaatgacgtggaacctttcttgtaaacttttattacatttgggagtttattttgtgtcaatg 62566  T
Q  117 ctctgattctgtaaca 132  Q
    || |||||||||||||    
T  62567 ctatgattctgtaaca 62582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 22031451 - 22031519
Alignment:
Q  138 aattcaatttaatttttaagaatgatgtgactatgtcttaaacttatttcctttgcactatttttaatt 206  Q
    |||||||||||||||||||| ||| |||||||| || |||||| ||||||| |||||||||||||||||    
T  22031451 aattcaatttaatttttaaggatggtgtgactaagttttaaacctatttccgttgcactatttttaatt 22031519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 134
Target Start/End: Complemental strand, 19264997 - 19264906
Alignment:
Q  44 tgagtcttggagaatgacgtggagtctttctcgtcaacttttatcgcatttggaagttca-ttttgtgtcaatgctctgattctgtaacact 134  Q
    |||||||||||| ||||||||||| |||||||||||| ||||||||   |||| |||| | |||||||||||||| | ||||||||||||||    
T  19264997 tgagtcttggaggatgacgtggagcctttctcgtcaatttttatcgtcgttgggagtttatttttgtgtcaatgcacggattctgtaacact 19264906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 135
Target Start/End: Complemental strand, 10152187 - 10152092
Alignment:
Q  39 agttgtgagtcttggagaatgacgtggagtctttctcgtcaacttttatcgcatttggaagttcattttgtgtcaatgctctgattctgtaacacta 135  Q
    ||||||||||||| | | ||||||||||| | |||||||||| ||||||||    ||| |||| |||| |||||| |||||||||||||||||||||    
T  10152187 agttgtgagtcttagtggatgacgtggagccgttctcgtcaatttttatcgttaatgggagtt-atttagtgtcattgctctgattctgtaacacta 10152092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 10152039 - 10151968
Alignment:
Q  136 ggaattcaatttaatttttaagaatgatgtgactatgtcttaaacttatttcctttgcactatttttaattaa 208  Q
    |||| ||| ||||||| |||||| |||||||||||||| || || ||||||||  |||||||| |||||||||    
T  10152039 ggaactcagtttaattgttaaga-tgatgtgactatgttttgaatttatttccgctgcactatatttaattaa 10151968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 20904238 - 20904189
Alignment:
Q  159 atgatgtgactatgtcttaaacttatttcctttgcactatttttaattaa 208  Q
    ||||||||||||||| || ||||||||||| |||||||||||||||||||    
T  20904238 atgatgtgactatgttttgaacttatttccgttgcactatttttaattaa 20904189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 20904428 - 20904318
Alignment:
Q  23 gacgaagaacgttagaagttgtgagtcttggagaatgacgtggagtctttctcgtcaactttt-atcgcatttggaagttcattttgtgtcaatgctctg 121  Q
    |||||||||| ||  ||||||| ||| |||||| ||| |||||||  ||  |||||||||||| ||||||  ||  ||||  ||||||||||||||||||    
T  20904428 gacgaagaacttttaaagttgtaagttttggaggatggcgtggagcattaatcgtcaactttttatcgcaactgcgagtttgttttgtgtcaatgctctg 20904329  T
Q  122 attctgtaaca 132  Q
    ||| |||||||    
T  20904328 attatgtaaca 20904318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 13236364 - 13236294
Alignment:
Q  61 cgtggagtctttctcgtcaactttt-atcgcatttggaagttcattttgtgtcaatgctctgattctgtaaca 132  Q
    ||||||| ||| ||||||||||||| |||||| |||  |||| |||||||||||||||||||||| |||||||    
T  13236364 cgtggagccttactcgtcaactttttatcgcaattg--agtttattttgtgtcaatgctctgattttgtaaca 13236294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 13236252 - 13236181
Alignment:
Q  136 ggaattcaatttaatttttaagaatgatgtgactatgtcttaaacttatttcctttgcactatttttaattaa 208  Q
    |||||||| || |||| |||| |||||||||||||||| || ||||||||||   ||||||||||||||||||    
T  13236252 ggaattcagttaaattgttaa-aatgatgtgactatgttttgaacttatttcagctgcactatttttaattaa 13236181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 22451639 - 22451706
Alignment:
Q  137 gaattcaatttaatttttaagaatgatgtgactatgtcttaaacttatttcctttgcactatttttaat 205  Q
    ||||||| ||||||| |||||| |||||||||| ||| |||||||||||||   |||||||||||||||    
T  22451639 gaattcagtttaattattaaga-tgatgtgactgtgttttaaacttatttctgctgcactatttttaat 22451706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 22451474 - 22451586
Alignment:
Q  15 atactcatgacgaagaacgttagaagttgtgagtcttggagaatgacgtggagtctttctcgtcaacttttatcg-catttggaagttcattttgtgtca 113  Q
    ||||||||||||| |||| ||||||||| ||||||| | || ||| || |||  |||||| |||||||||||| | |  |||| |||| |  ||||||||    
T  22451474 atactcatgacgaggaaccttagaagttttgagtctcgaaggatggcgaggaacctttcttgtcaacttttattgtcgcttgg-agtttaaattgtgtca 22451572  T
Q  114 atgctctgattctg 127  Q
    ||||||||||||||    
T  22451573 atgctctgattctg 22451586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0589 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0589
Description:

Target: scaffold0589; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 133
Target Start/End: Original strand, 575 - 673
Alignment:
Q  34 ttagaagttgtgagtcttggagaatgacgtggagtctttctcgtcaacttttatcgcatttggaagttcattttgtgtcaatgctctgattctgtaacac 133  Q
    |||||||||||||||||||||| | |  |||||| ||||||||| || |||||| |   |||| |||| |||||||||||||| | ||||||| ||||||    
T  575 ttagaagttgtgagtcttggaggagggtgtggagcctttctcgttaa-ttttattgttgttgggagtttattttgtgtcaatgttttgattctataacac 673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University