View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_high_88 (Length: 234)
Name: NF18071_high_88
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_high_88 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 40614021 - 40614196
Alignment:
| Q |
13 |
cataggtgatggcttaatcctttgatgtatgtgggcatatgctgattttgtttcgttccttggttttgctcttgcggtttttgtaacacaattatataan |
112 |
Q |
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| T |
40614021 |
cataggtggtggcttaatcctttaatgtatgtgggcatatgctgattttgtttcgttccttggttttgctcttgcggtttttgtaacaaaattatataat |
40614120 |
T |
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| Q |
113 |
nnnnnnatcctctttctcgatacaccttgtgctgtagaga-tgagatttagcattaatatatttcattttaccctt |
187 |
Q |
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| T |
40614121 |
ttttttatcctctttctcgatacaccttgtgcggtagagagtgagatttagcattaatatatttcattttaccctt |
40614196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 40617334 - 40617513
Alignment:
| Q |
13 |
cataggtgatggcttaatcctttgatgtatgtgggcatatgctgattttgtttcgttccttggttttgctcttgcggtttttgtaacacaattatataan |
112 |
Q |
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| T |
40617334 |
catagatggtggcttaaccttttgttgtgtgtgggcatatgttgattttgtttcactccttggttttgctcttgcgggttttgtaacacaattatataac |
40617433 |
T |
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| Q |
113 |
nnnnnnatcctctttctcgatacaccttgtgctgtagaga-tgagatttagcattaatatatttcattttacccttcttc |
191 |
Q |
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| T |
40617434 |
ttttttaacctcttcttcagtacaccttatattggagagagtgcgatttagcagtaatgtatttcattttacccttcttc |
40617513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 12243713 - 12243807
Alignment:
| Q |
13 |
cataggtgatggcttaatcctttgatgtatgtgggcatatgctgattttgtttcgttccttggttttgctcttgcggtttttgtaacacaattat |
107 |
Q |
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| T |
12243713 |
cataggcggtggcttaactccttgttgtgtgtgggcataggctgactttgtttctttccttggttttgttcttgcggtttttgaaacacatttat |
12243807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 41238405 - 41238349
Alignment:
| Q |
31 |
cctttgatgtatgtgggcatatgctgattttgtttcgttccttggttttgctcttgc |
87 |
Q |
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| T |
41238405 |
cctttgatgtgtacgggcatagactgattttgtttctttccttggttttgttcttgc |
41238349 |
T |
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