View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_high_9 (Length: 564)
Name: NF18071_high_9
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_high_9 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 87 - 564
Target Start/End: Complemental strand, 29204884 - 29204407
Alignment:
| Q |
87 |
gccagtatgcttacaacttctgcaatatatacacgagccatatcttcatctaagcaacctaagtttctcaacatagaatagagatctccaccatttaagt |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29204884 |
gccagtatgcttacaacttctgcaatatatacacgagccatatcttcatctaagcaacctaagtttctcaacatagaatagagatctccaccatttaagt |
29204785 |
T |
|
| Q |
187 |
actccataaccaaatacagattttctttacatgtgaaagaatagtaaaatcggacctgtttgtcacagatacatgaaaattagatttgttaacaacgaac |
286 |
Q |
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| T |
29204784 |
actccataaccaaatacagattttctttacatgtgaaagaatagtaaaatcggacctgtttgtcacagatacatgaaaattagatttgttaacaacgaac |
29204685 |
T |
|
| Q |
287 |
atcaacttcataaatgaagtaatgaatgacatggtatggcctgcttaccacaaaagggtttcgaacagatataagaatgtctcgctcagccaaaatacct |
386 |
Q |
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| T |
29204684 |
atcaacttcataaatgaagtaatgaatgacatggtatggcctgcttaccacaaaagggtttcgaacagatataagaatgtctcgctcagccaaaatacct |
29204585 |
T |
|
| Q |
387 |
tcaactgcatttttacgaatcatatctgcctttttcagaacctacaaaaatatcaaagaatagtttaaacgttttctaattattcagttagttaatttga |
486 |
Q |
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| T |
29204584 |
tcaactgcatttttacgaatcatatctgcctttttcagaacctacaaaaatatcaaagaatagtttaaacgttttctaattattcagttagttaatttga |
29204485 |
T |
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| Q |
487 |
caagactttctatactaatggtttctataagctataacaccattgctggactgaataatactagttttattttacaac |
564 |
Q |
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| T |
29204484 |
caagactttctatactaatggtttctataagctataacaccattgctggactgaataatactagttttattttacaac |
29204407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 87 - 564
Target Start/End: Original strand, 12646992 - 12647469
Alignment:
| Q |
87 |
gccagtatgcttacaacttctgcaatatatacacgagccatatcttcatctaagcaacctaagtttctcaacatagaatagagatctccaccatttaagt |
186 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12646992 |
gccaatatgcttacaacttctgcaatatatacacgagccatatcttcatctaagcaacctaagtttctcaacatagaatagagatctccaccatttaagt |
12647091 |
T |
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| Q |
187 |
actccataaccaaatacagattttctttacatgtgaaagaatagtaaaatcggacctgtttgtcacagatacatgaaaattagatttgttaacaacgaac |
286 |
Q |
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| T |
12647092 |
actccataaccaaatacagattttctttacatgtgaaagaatagtaaaatcggacctgtttgtcacagatacatgaaaattagatttgttaacaacgaac |
12647191 |
T |
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| Q |
287 |
atcaacttcataaatgaagtaatgaatgacatggtatggcctgcttaccacaaaagggtttcgaacagatataagaatgtctcgctcagccaaaatacct |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
12647192 |
atcaacttcataaatgaagtaatgaatgacatggtatggcctgcttaccacaaaaggatttcgaacagatataagaatgtctcgctcagccaaaatacct |
12647291 |
T |
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| Q |
387 |
tcaactgcatttttacgaatcatatctgcctttttcagaacctacaaaaatatcaaagaatagtttaaacgttttctaattattcagttagttaatttga |
486 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12647292 |
tcaactgcatttttacgaatcatatctgcctttttcagaacctacaaaaatatcaaggaatagtttaaacgttttctaattattcagttagttaatttga |
12647391 |
T |
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| Q |
487 |
caagactttctatactaatggtttctataagctataacaccattgctggactgaataatactagttttattttacaac |
564 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
12647392 |
caagactttctattctaatggtttctataagctataacaccgttgctggactgaataatactagttttattttacaac |
12647469 |
T |
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