View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_high_91 (Length: 229)
Name: NF18071_high_91
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_high_91 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 42 - 214
Target Start/End: Original strand, 33858496 - 33858667
Alignment:
| Q |
42 |
cacagttacaagggaggcgcggacaaagccaatcaccaaaacagaagctatacaaaaa-ccccccttaaaaccggaccagccnnnnnnnncacctgcagc |
140 |
Q |
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| T |
33858496 |
cacagttacaagggaggcgcggacaaagccaatcaccaaaacagaagctatacaaaaaaccccccttaaaaccggaccagccaaaaaa--cacctgcagc |
33858593 |
T |
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| Q |
141 |
aacagcttcaaggagccgaaccaaacccaactcccttagtagattcaaaaaacagccacgttcatcttctattt |
214 |
Q |
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| T |
33858594 |
aacagcttcaaggagccgaaccaaacccaactcccttagtagattaaaaaaacagccacgttcatcttctattt |
33858667 |
T |
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