View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18071_high_94 (Length: 227)
Name: NF18071_high_94
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_high_94 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 34645692 - 34645466
Alignment:
| Q |
1 |
gccaaagattcaaatgcaccaccaaacctttggaatctagtcactgtccatagagttgaggaactgaaagctatcattagaatgcttccaatttgggctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34645692 |
gccaaagattcaaatgcaccaccaaacctttggaatttagtcactgtccatagagttgaggaactgaaagctatcatcagaatgcttccaatttgggctt |
34645593 |
T |
|
| Q |
101 |
caggaattttgctcataatgtcttcatcacatttaggtagttttgtcattcaacaagctcgttcgatggaccgtcacctcactcattcattccaaattgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34645592 |
caggaattttgctcataatgtcttcatcacatttaggtagttttgtcattcaacaagctcgttcgatggaccgtcacctcactcattcattccaaattgc |
34645493 |
T |
|
| Q |
201 |
accagccaatatgtcaatttttggtgt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
34645492 |
accagccaatatgtcaatttttggtgt |
34645466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 34658709 - 34658499
Alignment:
| Q |
11 |
caaatgcaccaccaaacctttggaatctagtcactgtccatagagttgaggaactgaaagctatcattagaatgcttccaatttgggcttcaggaatttt |
110 |
Q |
| |
|
||||||||||| ||||| ||||||| ||| ||||||||||||||||||||| | ||| | ||||| ||||| |||||||||| || ||||||||||| |
|
|
| T |
34658709 |
caaatgcaccatcaaacttttggaaattagccactgtccatagagttgaggagttaaaatccatcatcagaatccttccaatttcagcatcaggaatttt |
34658610 |
T |
|
| Q |
111 |
gctcataatgtcttcatcacatttaggtagttttgtcattcaacaagctcgttcgatggaccgtcacctcactcattcattccaaattgcaccagccaat |
210 |
Q |
| |
|
|| ||| | ||| |||| | |||||| ||||| |||||||||| | ||||||||||||||| |||| |||| |||||| |||||||||| |
|
|
| T |
34658609 |
acttatagctgcctcagcacaccttcctagtttcgtcatcgaacaagctcgaacaatggaccgtcacctctctcacacatttcaaatttcaccagccaac |
34658510 |
T |
|
| Q |
211 |
atgtcaatttt |
221 |
Q |
| |
|
|||||| |||| |
|
|
| T |
34658509 |
atgtcagtttt |
34658499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 221
Target Start/End: Complemental strand, 34665316 - 34665172
Alignment:
| Q |
77 |
ttagaatgcttccaatttgggcttcaggaattttgctcataatgtcttcatcacatttaggtagttttgtcattcaacaagctcgttcgatggaccgtca |
176 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| | ||||||| | |||||| | | ||||||||| ||| |||||||||| | ||||| ||||| |
|
|
| T |
34665316 |
ttagaatgcttccaatttgggcatcaggaattctactcataactgcatcatcatctcaacatagttttgtgattgtacaagctcgtacaatggatcgtca |
34665217 |
T |
|
| Q |
177 |
cctcactcattcattccaaattgcaccagccaatatgtcaatttt |
221 |
Q |
| |
|
|||| |||| ||||| ||||| |||| |||| |||| ||||||| |
|
|
| T |
34665216 |
cctctctcacacattcgaaatttcaccggccagtatggcaatttt |
34665172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University