View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_high_98 (Length: 219)
Name: NF18071_high_98
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_high_98 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 25483335 - 25483151
Alignment:
| Q |
19 |
agaaagtatttatctgaaattcttcgtcctcctgctgtgaagaccaacattgccgactacaaaaccattgccgacaatcatactttaacggctaccaaac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
25483335 |
agaaagtatttatctgaaattcttcgtcctcctgctgtgaagaccaacattgccgactacaaaaccattgccgacaatcatactttaacgactacaaaac |
25483236 |
T |
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| Q |
119 |
catttcccaagccgttcccaaatgaaggtaagtttgtgccctgtctctttctttttaactttcaacactattaaaatattctcaccctttg |
209 |
Q |
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| T |
25483235 |
catttcccaa------cccaaatgaaggtaagtttgtgtcctgtctctttctttttaactttcaacagtattaaaatatcctcaccctttg |
25483151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 25860700 - 25860884
Alignment:
| Q |
19 |
agaaagtatttatctgaaattcttcgtcctcctgctgtgaagaccaacattgccgactacaaaaccattgccgacaatcatactttaacggctaccaaac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
25860700 |
agaaagtatttatctgaaattcttcgtcctcctgctgtgaagaccaacattgccgactacaaaaccattgccgacaatcatactttaacgactacaaaac |
25860799 |
T |
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| Q |
119 |
catttcccaagccgttcccaaatgaaggtaagtttgtgccctgtctctttctttttaactttcaacactattaaaatattctcaccctttg |
209 |
Q |
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| T |
25860800 |
catttcccaa------cccaaatgaaggtaagtttgtgtcctgtctctttctttttaactttcaacagtattaaaatatcctcaccctttg |
25860884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 25603787 - 25603881
Alignment:
| Q |
118 |
ccatttcccaagccgttcccaaatgaaggtaagtttgtgccctgtctctttcttttt---aactttcaacactattaaaatattctcaccctttg |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
25603787 |
ccatttcccaagccgttcccaaatgaaggtaagtttgtgccctgtctctttctttttaacaactttcaacactattaaaatatcctcaccctttg |
25603881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 25885862 - 25885956
Alignment:
| Q |
118 |
ccatttcccaagccgttcccaaatgaaggtaagtttgtgccctgtctctttcttttt---aactttcaacactattaaaatattctcaccctttg |
209 |
Q |
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||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
25885862 |
ccatttcccaagctgttgccaaatgaaggtaagtttgtgccctgtctctttctttttaacaactttcaacactattaaaatatcctcaccctttg |
25885956 |
T |
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