View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_1 (Length: 743)
Name: NF18071_low_1
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 5e-98; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 265 - 480
Target Start/End: Complemental strand, 6097967 - 6097751
Alignment:
| Q |
265 |
tgtttttattgatatttaattgctattttgtatgtttgtttgataaatataggctctaagatcaacacttgatggtggaaaagccttggaa---taccag |
361 |
Q |
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| T |
6097967 |
tgtttttattgatatttaattgctattttgtatgtttgtttgataaatataggctctaagatcaacatttgatggtggaaaagccttggaatagtaccag |
6097868 |
T |
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| Q |
362 |
attgtgttcttatcaatgggaagggaccttatcagtacaataatactcttgtcccaaataatgaaaagctataaaacactgacgcaataccaatgcctac |
461 |
Q |
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| T |
6097867 |
attgtgttcttatcaatgggaa--gaccttatcagtacaataatactcttgtcccaaataatgaaaagctatgaaacactgacgcaataccaatgcctac |
6097770 |
T |
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| Q |
462 |
acacagtgtacaccacacc |
480 |
Q |
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| T |
6097769 |
acacaatgtacaccacacc |
6097751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 549 - 728
Target Start/End: Complemental strand, 6097570 - 6097391
Alignment:
| Q |
549 |
gtaatttgttttgattatcttaaagaactatatctttattctttagctcttcttattcatgatttattattgttccatactttctatttgaacatcaagc |
648 |
Q |
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| T |
6097570 |
gtaatttgttttgattatcttaaagaactatatctttattctttagctcttcttattcatgatttattattgttccatactttctatttgaacatcaagc |
6097471 |
T |
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| Q |
649 |
tttttcttgatagccttgaacatcaagtacaatcaggaaccaactctgattcttttgttaaattcctatatggtaaatta |
728 |
Q |
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| T |
6097470 |
tttttcttgatagccttgaacatcaagtacaatcaggaaacaactctgattcttttgttaaattcatatatggtaaatta |
6097391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 153 - 413
Target Start/End: Original strand, 1592709 - 1592979
Alignment:
| Q |
153 |
ttcctttcgcgcagcccgacggcaaaattttcattatgattgg--att-----aatcaggactacacgtttagttattgcctttcatttaactttcttct |
245 |
Q |
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| T |
1592709 |
ttcctttcgcgcagcccgacggtgaaattttcattatgattggtgattggtatactcaggactacacggttagttatcacctttcattagactttcttct |
1592808 |
T |
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| Q |
246 |
ataaattttgaaaatgttgtg--tttttattgatatttaattgctattttgtatgtttgtttgataaatataggctctaagatcaacacttgatggtgga |
343 |
Q |
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| T |
1592809 |
gtaaattctgaagatgttgtgagtttttattgatatttgattgctattttgtatgtttttttgataaatataggctctaagatcaacacttgacggtgga |
1592908 |
T |
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| Q |
344 |
aaag-ccttggaataccagattgtgttcttatcaatgggaagggaccttatcagtacaataatactcttgt |
413 |
Q |
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| T |
1592909 |
aaagaccttggaataccagatggtgttcttatcaatgggaagggaccttatcagtacaataatactcttgt |
1592979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 446 - 651
Target Start/End: Original strand, 1593132 - 1593338
Alignment:
| Q |
446 |
caataccaatgcctacacacagtgtacaccacacccactttcaatttttacactggtctattggtttgagttttgactggnnnnnnnactcaatctctgc |
545 |
Q |
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| T |
1593132 |
caataccaatgcctacacacaatgtaaaccacacccactttcaatttttccactggtttattggtttgacttgtgactggttctttca-tcactctctgc |
1593230 |
T |
|
| Q |
546 |
aaagtaatttgttttgattatcttaaagaactatatctttattctttagctcttcttattcatgatt--tattattgttccatactttctatttgaacat |
643 |
Q |
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| T |
1593231 |
aaagtaatttgttttgattatctcaaagaactatatctttattcttcacctcttctcattcatgatttctactattgttccatactttctgtttgaacat |
1593330 |
T |
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| Q |
644 |
caagcttt |
651 |
Q |
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| T |
1593331 |
caaacttt |
1593338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 691 - 728
Target Start/End: Original strand, 46008827 - 46008864
Alignment:
| Q |
691 |
actctgattcttttgttaaattcctatatggtaaatta |
728 |
Q |
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| T |
46008827 |
actctgattcttttgttaaattcctatatggtaaatta |
46008864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 728
Target Start/End: Complemental strand, 4636551 - 4636518
Alignment:
| Q |
695 |
tgattcttttgttaaattcctatatggtaaatta |
728 |
Q |
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| T |
4636551 |
tgattcttttgttaaagtcctatatggtaaatta |
4636518 |
T |
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