View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_105 (Length: 218)
Name: NF18071_low_105
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_105 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 5e-58; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 1932607 - 1932728
Alignment:
| Q |
14 |
caaggagtgacataaaaaacaatagtacggaaggaatgcaccatagatacatcgagtgcaagaagtactcattttaagacaacatacaaccaaagactat |
113 |
Q |
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| T |
1932607 |
caaggagtgacataaaaaacaatagtacggaaggaatgcaacatagatacatcgagtgcaagaagtactcattttaagacaacatacaaccaaagattat |
1932706 |
T |
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| Q |
114 |
cacccctaacaacaaggccaat |
135 |
Q |
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| T |
1932707 |
cacccctaacaacaaggccaat |
1932728 |
T |
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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 1939011 - 1939091
Alignment:
| Q |
55 |
catagatacatcgagtgcaagaagtactcattttaagacaacatacaaccaaagactatcacccctaacaacaaggccaat |
135 |
Q |
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| T |
1939011 |
catagatacatcgagtgcaagaaatattcattttaagacaacatacaaccaaagactatcacacctaacaactaggccaat |
1939091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 1949747 - 1949803
Alignment:
| Q |
73 |
aagaagtactcattttaagacaacatacaaccaaagactatcacccctaacaacaag |
129 |
Q |
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| T |
1949747 |
aagaagtaatcattttaggacaacatacaactaaagacgatcacccttgacaacaag |
1949803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 120
Target Start/End: Original strand, 1930279 - 1930307
Alignment:
| Q |
92 |
acaacatacaaccaaagactatcacccct |
120 |
Q |
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| T |
1930279 |
acaacatacaaccaaagactatcacccct |
1930307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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