View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18071_low_107 (Length: 217)
Name: NF18071_low_107
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_107 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 10 - 183
Target Start/End: Complemental strand, 23523260 - 23523087
Alignment:
| Q |
10 |
aagcaaaggtaaaggacgttcatggttgaaactagggttactctgaactgtgccatttgggatacgccaaaaagctaaaggactaccattgataggttgt |
109 |
Q |
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| T |
23523260 |
aagcaaaggtaaaggacgttcatggttgaaactagggttactctgaactgtgccatttgggatacgccaaaaagctaaaggactaccattgataggttgt |
23523161 |
T |
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| Q |
110 |
tgttgagagtaagaagaagttgttggatggttatagaacctagttgagtttgtgttccatgttggataagaagg |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23523160 |
tgttgagagtaagaagaagttgttggatggttatagaacctagttgagtttgtgttccatgttggataagaagg |
23523087 |
T |
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