View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18071_low_109 (Length: 214)
Name: NF18071_low_109
Description: NF18071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18071_low_109 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 697588 - 697769
Alignment:
| Q |
19 |
aacacaatataagcatttgaaatagagaatagttttaacgatgtacgggcacccctaattcttcaacatttcattttctctttatatctctcttccaatc |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
697588 |
aacacaatataagcatttgaaagagagaatagttttaacgatgtacgggcacccctaattcttcaacatttcattttctctttatatctctcttccaatc |
697687 |
T |
|
| Q |
119 |
acatcatcaaactaaccaatcaaatatatctcatcactttctctttctttttcgcaatgtgtttaatgtgggcgtattgatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
697688 |
acatcatcaaactaaccaatcaaatatatctcatcactttctctttctttttcgcaatgtgtttaatgtgggcgtatggatg |
697769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 10515857 - 10515809
Alignment:
| Q |
80 |
ttcaacatttcattttctctttatatctctcttccaatcacatcatcaa |
128 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| ||||||||||||| |
|
|
| T |
10515857 |
ttcaacatttcattttctctttatctatctcttcctatcacatcatcaa |
10515809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University